annotate tool_dependencies.xml @ 13:884eccbe5659 draft

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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="FQVAL_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>   
    </set_environment>
    <package name="fastq_validator" version="1.0.0">
        <install version="1.0">
            <actions>
                 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
                 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
                <action type="shell_command">cd fastQValidator_0.1.1a</action>
                <action type="shell_command">make</action>
                <action type="move_directory_files">
                    <source_directory>fastQValidator</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
        </readme>
        <repository changeset_revision="ea2a9017e150" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>