diff bionumeric_convert.xml @ 0:b000a3130db8 draft

planemo upload commit e5e384ce6c90f595e8d397a7c45ca9c17d4a3e2a

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bionumeric_convert.xml	Mon Mar 18 13:15:57 2019 -0400
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+<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.1.0">
+    <description>compliant results</description>
+    <requirements>
+        <requirement type="package" version="0.24.1">pandas</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        $__tool_directory__/bionumeric_converter.py -f '$Input' -o '$output'
+    ]]></command>
+    <inputs>
+        <param type="data" name="Input" format="tabular"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="csv" from_work_dir="output" label="Output.csv"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="Input" value="results.tab"/>
+            <output name="output" value="Output.csv"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        **What it does**
+
+        This tool is a supplementary script that takes *only* BioHansel output data and converts it into a format compatible with bionumerics.
+
+        **How to run it**
+
+        1. Input any of your BioHansel output files (tech_results.tab, match_results.tab, and results.tab)
+        2. Click Execute
+
+        **Specific modifications done on the data**
+
+        1. Converts all commas in the output to "/"
+        2. Shortens BioHansel qc_messages if they are over 150 characters
+        3. Converts the .tab file to a .csv file
+
+    ]]></help>
+    <citations>
+    </citations>
+</tool>
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