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date Mon, 13 May 2019 12:59:15 -0400
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<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.2.0">
    <description>compliant results</description>
        <requirement type="package" version="0.24.1">pandas</requirement>
    <command detect_errors="exit_code"><![CDATA[
        $__tool_directory__/ -f '$Input' -o '$Output'
        <param type="data" name="Input" format="tabular"/>
        <data name="Output" format="csv" from_work_dir="output" label="Biohansel_Bionumerics"/>
            <param name="Input" value=""/>
            <output name="Output" value="Biohansel_Bionumerics.csv"/>
        **What it does**

        This tool is a supplementary script that takes Biohansel output data and converts it into a format compatible with Bionumerics.


        - *Individual* output or *Collection* of outputs for any of the three Biohansel results files (,, or


        - A .CSV file or a collection of .CSV files called "*Output*" that can be renamed and downloaded as required.

        **Specific modifications done to the data**

        1. Converts all commas in the output to "/"
        2. Splits Biohansel qc_message column into multiple columns if the message is longer than 150 characters
        3. Converts the .tab or .tsv file to a .csv file