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changeset 0:49bd84e136c7 draft

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planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
author nml
date Thu, 10 Dec 2015 12:30:50 -0500
parents
children a78a70d4806c
files merge.xml test-data/answer.txt test-data/input1 test-data/input2
diffstat 4 files changed, 46 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/merge.xml	Thu Dec 10 12:30:50 2015 -0500
@@ -0,0 +1,30 @@
+<tool id="collapse_dataset" name="Collapse Collection" version="1.0">
+  <description>Collapse collection into single dataset in order of the collection</description>
+  <command>
+    cat 
+    #for $f in $input_list# $f #end for#
+    > $output
+  </command>
+  <inputs>
+     <param name="input_list" type="data_collection" label="Collection of files to collapse into single dataset" help="" optional="false" collection_type="list" />
+  </inputs>
+  <outputs>
+    <data name="output" format_source="input_list" ></data>
+  </outputs>
+  <tests>
+	<test>
+	        <param name="input_list">
+        	  <collection type="list">
+	            <element name="input1" value="input1" />
+        	    <element name="input2" value="input2" />
+	          </collection>
+		</param>
+		<output name="output" file="answer.txt"/>
+	</test>
+  </tests>
+  <help>
+	Single tool that combines a list collection into a single file
+  </help>
+  <citations>
+  </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/answer.txt	Thu Dec 10 12:30:50 2015 -0500
@@ -0,0 +1,8 @@
+first file
+second
+third
+fourth line
+second file
+second
+third
+fourth line
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input1	Thu Dec 10 12:30:50 2015 -0500
@@ -0,0 +1,4 @@
+first file
+second
+third
+fourth line
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input2	Thu Dec 10 12:30:50 2015 -0500
@@ -0,0 +1,4 @@
+second file
+second
+third
+fourth line