Mercurial > repos > nml > collapse_collections
changeset 1:a78a70d4806c draft
planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
| author | nml |
|---|---|
| date | Tue, 17 May 2016 12:54:54 -0400 |
| parents | 49bd84e136c7 |
| children | 4263967e8d40 |
| files | first merge.xml second third |
| diffstat | 4 files changed, 35 insertions(+), 4 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/first Tue May 17 12:54:54 2016 -0400 @@ -0,0 +1,1 @@ +1 \ No newline at end of file
--- a/merge.xml Thu Dec 10 12:30:50 2015 -0500 +++ b/merge.xml Tue May 17 12:54:54 2016 -0400 @@ -1,12 +1,38 @@ -<tool id="collapse_dataset" name="Collapse Collection" version="1.0"> +<tool id="collapse_dataset" name="Collapse Collection" version="2.0"> <description>Collapse collection into single dataset in order of the collection</description> <command> - cat - #for $f in $input_list# $f #end for# + <![CDATA[ + + ( + #for $f in $input_list# + #if $filename.add_name: + #if str($filename.place_name) == "same": + printf "$f.name\t" ; + #else + printf "$f.name\n" ; + #end if + #end if + cat "$f" ; + #end for# + ) > $output + + ]]> + </command> <inputs> <param name="input_list" type="data_collection" label="Collection of files to collapse into single dataset" help="" optional="false" collection_type="list" /> + <conditional name="filename"> + <param name="add_name" type="boolean" display="checkboxes" label="Append File name"/> + <when value="true"> + <param name="place_name" type="select" label="Where to add dataset name"> + <option value="same">Same line</option> + <option value="above">Line Above</option> + </param> + </when> + <when value='false'> + </when> + </conditional> </inputs> <outputs> <data name="output" format_source="input_list" ></data> @@ -23,7 +49,9 @@ </test> </tests> <help> - Single tool that combines a list collection into a single file + Combines a list collection into a single file dataset with option to include dataset names. + + </help> <citations> </citations>