Mercurial > repos > nml > filter_stats

diff test-data/filter-stats-out.tabular @ 0:89c3ba37711c draft

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author nml
date Tue, 27 Aug 2019 12:31:08 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/filter-stats-out.tabular	Tue Aug 27 12:31:08 2019 -0400
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+Chromosome	Genomes
+chr	ALL	B	query
+Total number of N's and -'s	1	1	0
+Total percent of N's and -'s	50.00	50.00	0.00
+Total number of unfiltered variants in chromosome: 2
+
+================= Filter Summary Statistics =====================
+Number of sites used to generate phylogeny: 1
+Total number of sites identified: 2
+Number of sites filtered: 1
+Percentage of sites filtered: 50.00
+Coverage filtered: 1
+mpileup filtered: 0
+Invalid filtered: Invalid positions not analyzed.  Please use -a flag to analyze.
+