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view test-data/filter-stats-out.tabular @ 0:89c3ba37711c draft

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author nml
date Tue, 27 Aug 2019 12:31:08 -0400
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Chromosome	Genomes
chr	ALL	B	query
Total number of N's and -'s	1	1	0
Total percent of N's and -'s	50.00	50.00	0.00
Total number of unfiltered variants in chromosome: 2

================= Filter Summary Statistics =====================
Number of sites used to generate phylogeny: 1
Total number of sites identified: 2
Number of sites filtered: 1
Percentage of sites filtered: 50.00
Coverage filtered: 1
mpileup filtered: 0
Invalid filtered: Invalid positions not analyzed.  Please use -a flag to analyze.