Mercurial > repos > nml > filter_stats
view test-data/filter-stats-out.tabular @ 1:2fbea749a1d1 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author | nml |
---|---|
date | Tue, 23 Jun 2020 10:25:53 -0400 |
parents | 89c3ba37711c |
children |
line wrap: on
line source
Chromosome Genomes chr ALL B query Total number of N's and -'s 1 1 0 Total percent of N's and -'s 50.00 50.00 0.00 Total number of unfiltered variants in chromosome: 2 ================= Filter Summary Statistics ===================== Number of sites used to generate phylogeny: 1 Total number of sites identified: 2 Number of sites filtered: 1 Percentage of sites filtered: 50.00 Coverage filtered: 1 mpileup filtered: 0 Invalid filtered: Invalid positions not analyzed. Please use -a flag to analyze.