Mercurial > repos > nml > filter_vcf
comparison filtervcf.xml @ 1:48922d9ca355 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:26:18 -0400 |
| parents | 93ea196681c8 |
| children |
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| 0:93ea196681c8 | 1:48922d9ca355 |
|---|---|
| 1 <tool id="filtervcf" name="Filter vcf" version ="1.8.2"> | 1 <tool id="filtervcf" name="Filter vcf" version ="@VERSION@+galaxy1"> |
| 2 <description>filter out indels and complex SNVS</description> | 2 <description>filter out indels and complex SNVS</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <command detect_errors="exit_code"> | 7 <command detect_errors="exit_code"> |
| 7 filterVcf.pl --noindels $vcf | 8 filterVcf.pl --noindels $vcf |
| 8 -o $vcfout | 9 -o $vcfout |
| 9 </command> | 10 </command> |
| 10 <inputs> | 11 <inputs> |
| 20 </test> | 21 </test> |
| 21 </tests> | 22 </tests> |
| 22 <help> | 23 <help> |
| 23 Filter out indels and complex variants from VCF file | 24 Filter out indels and complex variants from VCF file |
| 24 </help> | 25 </help> |
| 25 <citations> | 26 <expand macro="citations"/> |
| 26 </citations> | |
| 27 </tool> | 27 </tool> |