Mercurial > repos > nml > package_python_3_4_hppy_0_9_6

comparison tool_dependencies.xml @ 3:1979b0ff1d00 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hppy_0_9_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 13:12:38 -0400
parents 3a5a3720d965
children a3569ef6d0ff
comparison
equal deleted inserted replaced
2:3a5a3720d965 3:1979b0ff1d00
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="python" version="3.4"> 3 <package name="python" version="3.4">
4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="hyphy-python" version="0.1.3"> 6 <package name="cython" version="0.23.4">
7 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="hppy" version="0.9.6"> 9 <package name="hyphy-python" version="0.1.3">
10 <install version="1.0"> 10 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 <actions> 11 </package>
12 <action type="setup_virtualenv">https://pypi.python.org/packages/source/f/fakemp/fakemp-0.9.1.tar.gz</action> 12 <package name="fakemp" version="0.9.1">
13 <action type="set_environment_for_install"> 13 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 14 </package>
15 <package name="hyphy-python" version="0.1.3" /> 15 <package name="hppy" version="0.9.6">
16 </repository> 16 <install version="1.0">
17 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 17 <actions>
18 <package name="python" version="3.4" /> 18 <action type="download_by_url">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action>
19 </repository> 19 <action type="set_environment_for_install">
20 </action> 20 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
21 <action type="make_directory">$INSTALL_DIR/lib/python</action> 21 <package name="hyphy-python" version="0.1.3" />
22 <action type="setup_virtualenv">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action> 22 </repository>
23 <action type="set_environment"> 23 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
24 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 24 <package name="python" version="3.4" />
25 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> 25 </repository>
26 <environment_variable action="append_to" name="PYTHONPATH_HPPY">$INSTALL_DIR/lib/python</environment_variable> 26 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
27 </action> 27 <package name="cython" version="0.23.4" />
28 </actions> 28 </repository>
29 </install> 29 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
30 <readme>hppy from https://github.com/veg/hppy</readme> 30 <package name="fakemp" version="0.9.1" />
31 </package> 31 </repository>
32 </action>
33 <action type="make_directory">$INSTALL_DIR/lib/python</action>
34 <action type="shell_command">
35 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
36 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
37 </action>
38 <action type="set_environment">
39 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
40 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable>
41 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable>
42 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable>
43 <environment_variable action="append_to" name="PYTHONPATH_HPPY">$INSTALL_DIR/lib/python</environment_variable>
44 </action>
45 </actions>
46 </install>
47 <readme>hppy from https://github.com/veg/hppy</readme>
48 </package>
32 </tool_dependency> 49 </tool_dependency>