Mercurial > repos > nml > sistr_cmd

changeset 1:9d7e381dfa5a draft

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planemo upload commit 9d3d0b2dc47cc803e560e396e5c13d2cfef9ed03
author nml
date Fri, 03 Mar 2017 14:31:21 -0500
parents ebee10be4297
children 13632190a0ff
files sistr_cmd.xml
diffstat 1 files changed, 1 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/sistr_cmd.xml	Wed Mar 01 12:35:39 2017 -0500
+++ b/sistr_cmd.xml	Fri Mar 03 14:31:21 2017 -0500
@@ -14,13 +14,7 @@
       -i '$fasta' '${$fasta.name.replace("." + $fasta.ext, "")}'
     #end for
     -f $output_format
-    #if $output_format == "tab"
-      -o sistr-report.tab
-    #elif $output_format == "csv"
-      -o sistr-report.csv
-    #elif $output_format == "json"
-      -o sistr-report.json
-    #end if
+    -o sistr-report.$output_format
     -p $cgmlst_profiles
     -n $novel_alleles
     -a $alleles_output