view fasta_to_fastq.xml @ 6:0649236c92ee draft default tip

Uploaded

<tool id="fasta_to_fastq" name="FASTA to FASTQ" version="1.3">
  <description>Convert a FASTA file to a FASTQ file</description>
  <requirements>
    <requirement type="package" version="1.79">biopython</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" />
  </stdio>
  <command><![CDATA[
    python '$__tool_directory__/fasta_to_fastq.py' 
      -i "$inputfile" 
      -s "$score" 
      -o "$output" 
  ]]>
  </command>
  <inputs>
    <param type="data" name="inputfile" format="fasta" label="Input fasta file"/>
    <param type="integer" name="score" label="Quality score (only positive int)" value="40"/>
  </inputs>
  <outputs>
    <data name="output" format="fastq"/>
  </outputs>
  <help><![CDATA[
    Takes a FASTA file and converts it to a FASTQ file by adding a static quality score. The default quality score for each base in all reads is 40.
  ]]> 
  </help>
</tool>