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1 <tool id="fasta_to_fastq" name="FASTA to FASTQ" version="1.3">
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2 <description>Convert a FASTA file to a FASTQ file</description>
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3 <requirements>
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4 <requirement type="package" version="1.79">biopython</requirement>
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5 </requirements>
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6 <stdio>
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7 <exit_code range="1:" />
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8 </stdio>
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9 <command><![CDATA[
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10 python '$__tool_directory__/fasta_to_fastq.py'
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11 -i "$inputfile"
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12 -s "$score"
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13 -o "$output"
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14 ]]>
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15 </command>
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16 <inputs>
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17 <param type="data" name="inputfile" format="fasta" label="Input fasta file"/>
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18 <param type="integer" name="score" label="Quality score (only positive int)" value="40"/>
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19 </inputs>
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20 <outputs>
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21 <data name="output" format="fastq"/>
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22 </outputs>
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23 <help><![CDATA[
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24 Takes a FASTA file and converts it to a FASTQ file by adding a static quality score. The default quality score for each base in all reads is 40.
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25 ]]>
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26 </help>
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27 </tool> |
