Mercurial > repos > p.lucas > ssuisserotyping_pipeline
changeset 3:f8e542216aea draft
Uploaded
| author | p.lucas |
|---|---|
| date | Thu, 08 Aug 2024 07:30:38 +0000 |
| parents | fc142f5cb6f1 |
| children | 8e5694208b79 |
| files | Prepare_Ssuis_serotypingPipeline.py |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/Prepare_Ssuis_serotypingPipeline.py Thu Aug 08 07:30:09 2024 +0000 +++ b/Prepare_Ssuis_serotypingPipeline.py Thu Aug 08 07:30:38 2024 +0000 @@ -52,7 +52,8 @@ f = options.f r = options.r - way_pipeline = "/results/anses/bin/SsuisSerotyping_pipeline/" + # Need to clone repo from git : https://github.com/streplab/SsuisSerotyping_pipeline.git + way_pipeline = "/nfs/bin/SsuisSerotyping_pipeline/" input_path = os.path.splitext(output2)[0]+"_input_file_test/" output_path = os.path.splitext(output2)[0]+"_Results/" os.system("mkdir -p "+input_path)