Mercurial > repos > pablocarb > synbiodesign
comparison rpviz/README.md @ 16:fe78fd6b315a draft
planemo upload commit 87db86a34f2d92eb2c9756bf9ee53ae2970554d5
| author | pablocarb |
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| date | Tue, 11 Jun 2019 11:42:40 -0400 |
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| 15:785b6253af1f | 16:fe78fd6b315a |
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| 1 # rpviz | |
| 2 Metabolic engineering visualizer | |
| 3 | |
| 4 csv_network.py : To read information from a csv file | |
| 5 sbml2list.py : To read information from a sbml file | |
| 6 | |
| 7 smile2picture.py : To convert SMILES into svg image | |
| 8 | |
| 9 network2json.py : To convert the network in a json file | |
| 10 | |
| 11 ## 1 html/pathway | |
| 12 py2html : To create an html file from a json file, using a template (in html/template.html) with jinja2 and to use it with | |
| 13 | |
| 14 ## 1 html updated for each pathway | |
| 15 py2html2 : To create a .js file with the json file and to open it with the template2 (in html/template2.html) and the network_viewer.js | |
| 16 | |
| 17 nxvisualizer.py : To open the network directly in Cytoscape | |
| 18 |