Mercurial > repos > pablocarb > synbiodesign
diff rpviz/README.md @ 16:fe78fd6b315a draft
planemo upload commit 87db86a34f2d92eb2c9756bf9ee53ae2970554d5
author | pablocarb |
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date | Tue, 11 Jun 2019 11:42:40 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rpviz/README.md Tue Jun 11 11:42:40 2019 -0400 @@ -0,0 +1,18 @@ +# rpviz +Metabolic engineering visualizer + +csv_network.py : To read information from a csv file +sbml2list.py : To read information from a sbml file + +smile2picture.py : To convert SMILES into svg image + +network2json.py : To convert the network in a json file + +## 1 html/pathway +py2html : To create an html file from a json file, using a template (in html/template.html) with jinja2 and to use it with + +## 1 html updated for each pathway +py2html2 : To create a .js file with the json file and to open it with the template2 (in html/template2.html) and the network_viewer.js + +nxvisualizer.py : To open the network directly in Cytoscape +