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comparison trimal_repo/dataset/example.094.DNADeg.sequential_phy @ 0:b15a3147e604 draft

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"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Fri, 25 Mar 2022 17:10:43 +0000
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-1:000000000000 0:b15a3147e604
1 12 637 I
2 VRA17 CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
3 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
4 TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
5 CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
6 AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
7 GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
8 TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
9 TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
10 AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
11 TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
12 GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
13 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
14 ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
15 VXA14085 CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
16 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
17 TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
18 CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
19 AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
20 GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
21 TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
22 TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
23 AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
24 TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
25 GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
26 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
27 ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
28 VandXX8Z AAAATTAAAT TCTAGATAGA ATAATGATGA TGACAATTTT CTATCTATAA
29 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
30 TGTTATTCRT CTTTAGTGGG TTTAAAGGGT ACCTAGACAG GAAATAAAGC
31 CAAAAGGGAC TAATTTCCTA GAGTTTTATG TGAGAATGTT GAACTATCAG
32 AGGAGAGTCA AAATTTTTTG ATACTGGTGG GACAGGTAAC GGCGAAGGCG
33 ACATTCTATG TAAAAACTGA CGTTGAGGAA CGAAGCCTAG GGTAGCGATA
34 AGGATTAGAT ACCCCAGTAG TCCTAGGAGA AAATTATGAG TGCCATAGGC
35 TAGATATATT AGTTTATAAA TGAAAGTGTA AGCATTCCAC CTCATGAGTA
36 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACTARTAS
37 TGAAGTATGT TATTTAATTC GATGATCCCC GAATAACCTT ACCACGCATT
38 GCATAA---- ---------- --TATTACAA GCGCTGCACG GCTGTCTGCA
39 GTTAATGTCG TGAGATCCTG GTTAGTTCCT TAAATTAACG AAAGCCCTTG
40 ACGCTGGACC ATTAGCATTG GGACAATAAT AGGGACT
41 Vand17402 CGTATAAAGT TCTAGATATA ATAATGAATA TGACAATTTT ATATCTATAA
42 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
43 TGTTATTCAT CTTTAATGGG TTTAAAGGGT ACCTAGACAG AAAATCAAGC
44 CAATAGGGAC TAATTTTCTA GAGTTTCAAG TGAGAATGAC GAATTACCAG
45 AGGAGAGTCA AAATTTTATG ATACTGGTAG GACGGGTAAC GGCGAAGGCG
46 ACATTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCTTG GGTAGCGATA
47 AGGATTARAT ACCCTAGTAG TCCAGGGAGA AAATTATGAG TGCCATAGGC
48 TAGATAAGTT AGCTTATAAA TGAAAGTGTA AGCATTCCAC CTCWTGAGTA
49 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAATCAGTAG
50 TGAAGTATGT TATTTAATTC GATGGTCCGS GAATAACCTT AYCACGCTTT
51 ---------- ---------- ---------- ---------- ----------
52 ---------- ---------- ---------- ---------- ----------
53 ---------- ---------- ---------- -------
54 VfunS CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
55 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
56 TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
57 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
58 AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
59 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
60 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
61 TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
62 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
63 TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
64 GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
65 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
66 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
67 Vfun1171 CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
68 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
69 TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
70 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
71 AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
72 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
73 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
74 TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
75 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
76 TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
77 GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
78 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
79 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
80 Vfun1047 CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
81 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
82 TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
83 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
84 AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
85 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
86 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
87 TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
88 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
89 TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
90 GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
91 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
92 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
93 Vhyd18793 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
94 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
95 TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
96 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
97 AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
98 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
99 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
100 TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
101 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
102 TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
103 GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
104 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
105 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
106 Vdol16777 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTAT TTATCTATTA
107 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
108 TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
109 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GAAGAAAGTC GAACACCTGG
110 AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
111 ACTTTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
112 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
113 TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
114 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
115 TGAAGTATGT CATTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
116 GAATAT-CTT TTGGGGGATC GCTTATACAA GTGCTGCACG GCTGTCTTTA
117 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
118 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
119 Vhyd16290 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
120 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
121 TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG KAAATCAAGC
122 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
123 AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
124 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
125 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
126 TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
127 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
128 TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
129 GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
130 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
131 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
132 Vhyd16621 ---------- ---------- ---------- ---------- ----------
133 -TCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
134 TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATAAAGC
135 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
136 AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
137 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
138 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
139 TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
140 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
141 TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
142 GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
143 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
144 ---------- ---------- ---------- -------
145 Vhyd16776 CGTATAAAAT TCTAGATAAA AAACTGATRA TGACAACTCT TTATCTATTA
146 GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
147 TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
148 CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
149 AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
150 ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
151 AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
152 TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
153 AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
154 TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
155 GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
156 GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
157 ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT