view trimal_repo/dataset/example.094.DNADeg.sequential_phy @ 0:b15a3147e604 draft

"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Fri, 25 Mar 2022 17:10:43 +0000
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 12 637 I
VRA17       CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
            CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
            AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
            GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
            TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
            TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
            AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
VXA14085    CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
            CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
            AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
            GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
            TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
            TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
            AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
VandXX8Z    AAAATTAAAT TCTAGATAGA ATAATGATGA TGACAATTTT CTATCTATAA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
            TGTTATTCRT CTTTAGTGGG TTTAAAGGGT ACCTAGACAG GAAATAAAGC
            CAAAAGGGAC TAATTTCCTA GAGTTTTATG TGAGAATGTT GAACTATCAG
            AGGAGAGTCA AAATTTTTTG ATACTGGTGG GACAGGTAAC GGCGAAGGCG
            ACATTCTATG TAAAAACTGA CGTTGAGGAA CGAAGCCTAG GGTAGCGATA
            AGGATTAGAT ACCCCAGTAG TCCTAGGAGA AAATTATGAG TGCCATAGGC
            TAGATATATT AGTTTATAAA TGAAAGTGTA AGCATTCCAC CTCATGAGTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACTARTAS
            TGAAGTATGT TATTTAATTC GATGATCCCC GAATAACCTT ACCACGCATT
            GCATAA---- ---------- --TATTACAA GCGCTGCACG GCTGTCTGCA
            GTTAATGTCG TGAGATCCTG GTTAGTTCCT TAAATTAACG AAAGCCCTTG
            ACGCTGGACC ATTAGCATTG GGACAATAAT AGGGACT
Vand17402   CGTATAAAGT TCTAGATATA ATAATGAATA TGACAATTTT ATATCTATAA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
            TGTTATTCAT CTTTAATGGG TTTAAAGGGT ACCTAGACAG AAAATCAAGC
            CAATAGGGAC TAATTTTCTA GAGTTTCAAG TGAGAATGAC GAATTACCAG
            AGGAGAGTCA AAATTTTATG ATACTGGTAG GACGGGTAAC GGCGAAGGCG
            ACATTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCTTG GGTAGCGATA
            AGGATTARAT ACCCTAGTAG TCCAGGGAGA AAATTATGAG TGCCATAGGC
            TAGATAAGTT AGCTTATAAA TGAAAGTGTA AGCATTCCAC CTCWTGAGTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAATCAGTAG
            TGAAGTATGT TATTTAATTC GATGGTCCGS GAATAACCTT AYCACGCTTT
            ---------- ---------- ---------- ---------- ----------
            ---------- ---------- ---------- ---------- ----------
            ---------- ---------- ---------- -------
VfunS       CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vfun1171    CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vfun1047    CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd18793   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vdol16777   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTAT TTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GAAGAAAGTC GAACACCTGG
            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
            ACTTTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
            TGAAGTATGT CATTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
            GAATAT-CTT TTGGGGGATC GCTTATACAA GTGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd16290   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG KAAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd16621   ---------- ---------- ---------- ---------- ----------
            -TCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATAAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ---------- ---------- ---------- -------
Vhyd16776   CGTATAAAAT TCTAGATAAA AAACTGATRA TGACAACTCT TTATCTATTA
            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT