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diff trimal_repo/dataset/example.094.DNADeg.sequential_phy @ 0:b15a3147e604 draft

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"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Fri, 25 Mar 2022 17:10:43 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trimal_repo/dataset/example.094.DNADeg.sequential_phy	Fri Mar 25 17:10:43 2022 +0000
@@ -0,0 +1,157 @@
+ 12 637 I
+VRA17       CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
+            CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
+            AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
+            GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
+            TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
+            TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
+            AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
+            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
+            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
+VXA14085    CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
+            CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
+            AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
+            GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
+            TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
+            TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
+            AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
+            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
+            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
+VandXX8Z    AAAATTAAAT TCTAGATAGA ATAATGATGA TGACAATTTT CTATCTATAA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
+            TGTTATTCRT CTTTAGTGGG TTTAAAGGGT ACCTAGACAG GAAATAAAGC
+            CAAAAGGGAC TAATTTCCTA GAGTTTTATG TGAGAATGTT GAACTATCAG
+            AGGAGAGTCA AAATTTTTTG ATACTGGTGG GACAGGTAAC GGCGAAGGCG
+            ACATTCTATG TAAAAACTGA CGTTGAGGAA CGAAGCCTAG GGTAGCGATA
+            AGGATTAGAT ACCCCAGTAG TCCTAGGAGA AAATTATGAG TGCCATAGGC
+            TAGATATATT AGTTTATAAA TGAAAGTGTA AGCATTCCAC CTCATGAGTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACTARTAS
+            TGAAGTATGT TATTTAATTC GATGATCCCC GAATAACCTT ACCACGCATT
+            GCATAA---- ---------- --TATTACAA GCGCTGCACG GCTGTCTGCA
+            GTTAATGTCG TGAGATCCTG GTTAGTTCCT TAAATTAACG AAAGCCCTTG
+            ACGCTGGACC ATTAGCATTG GGACAATAAT AGGGACT
+Vand17402   CGTATAAAGT TCTAGATATA ATAATGAATA TGACAATTTT ATATCTATAA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
+            TGTTATTCAT CTTTAATGGG TTTAAAGGGT ACCTAGACAG AAAATCAAGC
+            CAATAGGGAC TAATTTTCTA GAGTTTCAAG TGAGAATGAC GAATTACCAG
+            AGGAGAGTCA AAATTTTATG ATACTGGTAG GACGGGTAAC GGCGAAGGCG
+            ACATTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCTTG GGTAGCGATA
+            AGGATTARAT ACCCTAGTAG TCCAGGGAGA AAATTATGAG TGCCATAGGC
+            TAGATAAGTT AGCTTATAAA TGAAAGTGTA AGCATTCCAC CTCWTGAGTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAATCAGTAG
+            TGAAGTATGT TATTTAATTC GATGGTCCGS GAATAACCTT AYCACGCTTT
+            ---------- ---------- ---------- ---------- ----------
+            ---------- ---------- ---------- ---------- ----------
+            ---------- ---------- ---------- -------
+VfunS       CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
+            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
+            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
+            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vfun1171    CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
+            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
+            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
+            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vfun1047    CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
+            AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
+            TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
+            GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vhyd18793   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
+            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
+            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
+            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vdol16777   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTAT TTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GAAGAAAGTC GAACACCTGG
+            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
+            ACTTTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
+            TGAAGTATGT CATTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
+            GAATAT-CTT TTGGGGGATC GCTTATACAA GTGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vhyd16290   CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG KAAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
+            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
+            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
+            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
+Vhyd16621   ---------- ---------- ---------- ---------- ----------
+            -TCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATAAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
+            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
+            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
+            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ---------- ---------- ---------- -------
+Vhyd16776   CGTATAAAAT TCTAGATAAA AAACTGATRA TGACAACTCT TTATCTATTA
+            GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
+            TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
+            CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
+            AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
+            ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
+            AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
+            TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
+            AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
+            TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
+            GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
+            GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
+            ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
\ No newline at end of file