changeset 4:34a0adda2770 draft

Uploaded v0.0.3 which includes the test files required for the unit tests.
author peterjc
date Wed, 20 Feb 2013 13:18:07 -0500
parents 60c2d6ce926d
children 662fea0fe6b2
files test-data/blastp_four_human_vs_rhodopsin.xml test-data/blastp_four_human_vs_rhodopsin_top3.tabular tools/ncbi_blast_plus/blastxml_to_top_descr.txt
diffstat 3 files changed, 675 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/blastp_four_human_vs_rhodopsin.xml	Wed Feb 20 13:18:07 2013 -0500
@@ -0,0 +1,646 @@
+<?xml version="1.0"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+  <BlastOutput_program>blastp</BlastOutput_program>
+  <BlastOutput_version>BLASTP 2.2.26+</BlastOutput_version>
+  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
+  <BlastOutput_db></BlastOutput_db>
+  <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID>
+  <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
+  <BlastOutput_query-len>406</BlastOutput_query-len>
+  <BlastOutput_param>
+    <Parameters>
+      <Parameters_matrix>BLOSUM62</Parameters_matrix>
+      <Parameters_expect>1e-08</Parameters_expect>
+      <Parameters_gap-open>11</Parameters_gap-open>
+      <Parameters_gap-extend>1</Parameters_gap-extend>
+      <Parameters_filter>F</Parameters_filter>
+    </Parameters>
+  </BlastOutput_param>
+  <BlastOutput_iterations>
+    <Iteration>
+      <Iteration_iter-num>1</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>2</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>3</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>4</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>5</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>6</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>406</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>30</Statistics_hsp-len>
+          <Statistics_eff-space>119568</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>7</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>8</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>9</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>10</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>11</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>12</Iteration_iter-num>
+      <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+      <Iteration_query-len>1161</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>38</Statistics_hsp-len>
+          <Statistics_eff-space>348130</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>13</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>14</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>15</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>16</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>17</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>18</Iteration_iter-num>
+      <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+      <Iteration_query-len>1382</Iteration_query-len>
+      <Iteration_hits></Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>39</Statistics_hsp-len>
+          <Statistics_eff-space>414987</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+      <Iteration_message>No hits found</Iteration_message>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>19</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id>
+          <Hit_def>rhodopsin [Felis catus]</Hit_def>
+          <Hit_accession>NP_001009242</Hit_accession>
+          <Hit_len>348</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>701.049</Hsp_bit-score>
+              <Hsp_score>1808</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>348</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>348</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>336</Hsp_identity>
+              <Hsp_positive>343</Hsp_positive>
+              <Hsp_gaps>0</Hsp_gaps>
+              <Hsp_align-len>348</Hsp_align-len>
+              <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
+              <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
+              <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>20</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id>
+          <Hit_def>RecName: Full=Rhodopsin</Hit_def>
+          <Hit_accession>P56514</Hit_accession>
+          <Hit_len>354</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>619.002</Hsp_bit-score>
+              <Hsp_score>1595</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>341</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>342</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>290</Hsp_identity>
+              <Hsp_positive>322</Hsp_positive>
+              <Hsp_gaps>1</Hsp_gaps>
+              <Hsp_align-len>342</Hsp_align-len>
+              <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
+              <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
+              <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA  SKTE</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>21</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id>
+          <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def>
+          <Hit_accession>ADB45242</Hit_accession>
+          <Hit_len>328</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>653.284</Hsp_bit-score>
+              <Hsp_score>1684</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>11</Hsp_query-from>
+              <Hsp_query-to>338</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>328</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>311</Hsp_identity>
+              <Hsp_positive>321</Hsp_positive>
+              <Hsp_gaps>0</Hsp_gaps>
+              <Hsp_align-len>328</Hsp_align-len>
+              <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
+              <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
+              <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>22</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id>
+          <Hit_def>rhodopsin [Myotis pilosus]</Hit_def>
+          <Hit_accession>ADB45229</Hit_accession>
+          <Hit_len>328</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>631.328</Hsp_bit-score>
+              <Hsp_score>1627</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>11</Hsp_query-from>
+              <Hsp_query-to>338</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>328</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>311</Hsp_identity>
+              <Hsp_positive>323</Hsp_positive>
+              <Hsp_gaps>0</Hsp_gaps>
+              <Hsp_align-len>328</Hsp_align-len>
+              <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
+              <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
+              <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>23</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|223523|prf||0811197A</Hit_id>
+          <Hit_def>rhodopsin [Bos taurus]</Hit_def>
+          <Hit_accession>0811197A</Hit_accession>
+          <Hit_len>347</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>673.315</Hsp_bit-score>
+              <Hsp_score>1736</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>348</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>347</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>324</Hsp_identity>
+              <Hsp_positive>336</Hsp_positive>
+              <Hsp_gaps>1</Hsp_gaps>
+              <Hsp_align-len>348</Hsp_align-len>
+              <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
+              <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
+              <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>24</Iteration_iter-num>
+      <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+      <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
+      <Iteration_query-len>348</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id>
+          <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def>
+          <Hit_accession>BAB21486</Hit_accession>
+          <Hit_len>354</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>599.356</Hsp_bit-score>
+              <Hsp_score>1544</Hsp_score>
+              <Hsp_evalue>0</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>341</Hsp_query-to>
+              <Hsp_hit-from>1</Hsp_hit-from>
+              <Hsp_hit-to>342</Hsp_hit-to>
+              <Hsp_query-frame>0</Hsp_query-frame>
+              <Hsp_hit-frame>0</Hsp_hit-frame>
+              <Hsp_identity>281</Hsp_identity>
+              <Hsp_positive>314</Hsp_positive>
+              <Hsp_gaps>1</Hsp_gaps>
+              <Hsp_align-len>342</Hsp_align-len>
+              <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
+              <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
+              <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV  TW MALACA PPL GWSRYIPEGLQCSCGIDYYT  P +NNESFVIYMF  HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP   +D ASAT SKTE</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>0</Statistics_db-num>
+          <Statistics_db-len>0</Statistics_db-len>
+          <Statistics_hsp-len>29</Statistics_hsp-len>
+          <Statistics_eff-space>101761</Statistics_eff-space>
+          <Statistics_kappa>0.041</Statistics_kappa>
+          <Statistics_lambda>0.267</Statistics_lambda>
+          <Statistics_entropy>0.14</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+  </BlastOutput_iterations>
+</BlastOutput>
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/blastp_four_human_vs_rhodopsin_top3.tabular	Wed Feb 20 13:18:07 2013 -0500
@@ -0,0 +1,25 @@
+#Query	BLAST hit 1	BLAST hit 2	BLAST hit 3
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9BS26|ERP44_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|Q9NSY1|BMP2K_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P06213|INSR_HUMAN			
+sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1| rhodopsin [Felis catus]		
+sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU RecName: Full=Rhodopsin		
+sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1| rhodopsin [Cynopterus brachyotis]		
+sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1| rhodopsin [Myotis pilosus]		
+sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A rhodopsin [Bos taurus]		
+sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1| fresh water form rod opsin [Conger myriaster]		
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Fri Feb 08 06:05:33 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Wed Feb 20 13:18:07 2013 -0500
@@ -50,6 +50,7 @@
 v0.0.1 - Initial version.
 v0.0.2 - Since BLAST+ was moved out of the Galaxy core, now have a dependency
          on the 'blast_datatypes' repository in the Tool Shed.
+v0.0.3 - Include the test files required to run the unit tests
 
 
 Developers
@@ -61,7 +62,7 @@
 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder:
 
-$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/repository_dependencies.xml
+$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/repository_dependencies.xml test-data/blastp_four_human_vs_rhodopsin.xml test-data/blastp_four_human_vs_rhodopsin_top3.tabular
 
 Check this worked:
 
@@ -70,6 +71,8 @@
 tools/ncbi_blast_plus/blastxml_to_top_descr.txt
 tools/ncbi_blast_plus/blastxml_to_top_descr.xml
 tools/ncbi_blast_plus/repository_dependencies.xml
+test-data/blastp_four_human_vs_rhodopsin.xml
+test-data/blastp_four_human_vs_rhodopsin_top3.tabular
 
 
 Licence (MIT/BSD style)