Mercurial > repos > peterjc > blastxml_to_top_descr

changeset 5:662fea0fe6b2 draft

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Uploaded v0.0.4, quotes filenames in case the contain spaces
author peterjc
date Wed, 20 Feb 2013 13:36:37 -0500
parents 34a0adda2770
children 8a0771c5e236
files tools/ncbi_blast_plus/blastxml_to_top_descr.txt tools/ncbi_blast_plus/blastxml_to_top_descr.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
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line diff
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Wed Feb 20 13:18:07 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Wed Feb 20 13:36:37 2013 -0500
@@ -51,6 +51,7 @@
 v0.0.2 - Since BLAST+ was moved out of the Galaxy core, now have a dependency
          on the 'blast_datatypes' repository in the Tool Shed.
 v0.0.3 - Include the test files required to run the unit tests
+v0.0.4 - Quote filenames in case they contain spaces (internal change)
 
 
 Developers
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Feb 20 13:18:07 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Feb 20 13:36:37 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.1">
+<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.4">
     <description>Make a table from BLAST XML</description>
     <command interpreter="python">
-      blastxml_to_top_descr.py $blastxml_file $tabular_file $topN
+      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
     </command>
     <inputs>
         <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/>