Mercurial > repos > peterjc > package_mira_3_4_1_1
annotate tool_dependencies.xml @ 0:1c03c304fe69 draft default tip
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
author | peterjc |
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date | Wed, 05 Aug 2015 11:22:46 -0400 |
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1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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1 <?xml version="1.0"?> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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2 <tool_dependency> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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3 <package name="MIRA" version="3.4.1.1"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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4 <install version="1.0"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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5 <actions_group> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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6 <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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7 <actions architecture="x86_64" os="linux"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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8 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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9 <action type="move_directory_files"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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10 <source_directory>bin</source_directory> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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11 <destination_directory>$INSTALL_DIR</destination_directory> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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12 </action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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13 <action type="set_environment"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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15 </action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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16 </actions> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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17 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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18 <actions> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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19 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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20 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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21 <action type="shell_command">uname</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
peterjc
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22 <action type="shell_command">arch</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
peterjc
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23 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
peterjc
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24 <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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25 <action type="shell_command">false</action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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26 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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27 </actions> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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28 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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29 <action type="set_environment"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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31 </action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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32 <action type="set_environment"> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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33 <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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34 </action> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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35 </actions_group> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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36 </install> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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37 <readme> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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38 Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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39 for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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40 could use once the Galaxy installation framework allow that kind of flexibility. |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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41 |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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42 http://chevreux.org/projects_mira.html |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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43 http://sourceforge.net/projects/mira-assembler/ |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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44 |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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45 The environment variable ``$MIRA3`` will point to the folder containing the binaries, |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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46 which is also pre-pended to the ``$PATH`` variable. |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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47 </readme> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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48 </package> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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49 </tool_dependency> |
1c03c304fe69
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
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50 |