Mercurial > repos > peterjc > package_mira_3_4_1_1
comparison tool_dependencies.xml @ 0:1c03c304fe69 draft default tip
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
author | peterjc |
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date | Wed, 05 Aug 2015 11:22:46 -0400 |
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-1:000000000000 | 0:1c03c304fe69 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="MIRA" version="3.4.1.1"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> | |
7 <actions architecture="x86_64" os="linux"> | |
8 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2</action> | |
9 <action type="move_directory_files"> | |
10 <source_directory>bin</source_directory> | |
11 <destination_directory>$INSTALL_DIR</destination_directory> | |
12 </action> | |
13 <action type="set_environment"> | |
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
15 </action> | |
16 </actions> | |
17 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
18 <actions> | |
19 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
20 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
21 <action type="shell_command">uname</action> | |
22 <action type="shell_command">arch</action> | |
23 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> | |
24 <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action> | |
25 <action type="shell_command">false</action> | |
26 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
27 </actions> | |
28 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
29 <action type="set_environment"> | |
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> | |
31 </action> | |
32 <action type="set_environment"> | |
33 <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable> | |
34 </action> | |
35 </actions_group> | |
36 </install> | |
37 <readme> | |
38 Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries | |
39 for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we | |
40 could use once the Galaxy installation framework allow that kind of flexibility. | |
41 | |
42 http://chevreux.org/projects_mira.html | |
43 http://sourceforge.net/projects/mira-assembler/ | |
44 | |
45 The environment variable ``$MIRA3`` will point to the folder containing the binaries, | |
46 which is also pre-pended to the ``$PATH`` variable. | |
47 </readme> | |
48 </package> | |
49 </tool_dependency> | |
50 |