Mercurial > repos > peterjc > seq_composition
changeset 3:7a26bb458806 draft
v0.0.4 using Biopython 1.67 via Tool Shed or (Bio)Conda
| author | peterjc |
|---|---|
| date | Wed, 10 May 2017 13:03:42 -0400 |
| parents | 4283011f4be2 |
| children | 13be788233da |
| files | tools/seq_composition/README.rst tools/seq_composition/seq_composition.xml tools/seq_composition/tool_dependencies.xml |
| diffstat | 3 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/tools/seq_composition/README.rst Wed Feb 01 10:00:22 2017 -0500 +++ b/tools/seq_composition/README.rst Wed May 10 13:03:42 2017 -0400 @@ -61,6 +61,7 @@ v0.0.2 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.0.3 - Python style updates (internal change only). +v0.0.4 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. ======= ====================================================================== @@ -75,17 +76,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/seq_composition/ + $ planemo shed_update -t testtoolshed --check_diff tools/seq_composition/ ... or:: - $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/seq_composition/ + $ planemo shed_update -t toolshed --check_diff tools/seq_composition/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/seq_composition/ + $ planemo shed_upload --tar_only tools/seq_composition/ ... $ tar -tzf shed_upload.tar.gz test-data/MID4_GLZRM4E04_rnd30_frclip.sff
--- a/tools/seq_composition/seq_composition.xml Wed Feb 01 10:00:22 2017 -0500 +++ b/tools/seq_composition/seq_composition.xml Wed May 10 13:03:42 2017 -0400 @@ -1,8 +1,7 @@ -<tool id="seq_composition" name="Sequence composition" version="0.0.3"> +<tool id="seq_composition" name="Sequence composition" version="0.0.4"> <description>Count bases or amino-acids</description> <requirements> - <requirement type="package" version="1.64">biopython</requirement> - <requirement type="python-module">Bio</requirement> + <requirement type="package" version="1.67">biopython</requirement> </requirements> <stdio> <!-- Anything other than zero is an error -->
--- a/tools/seq_composition/tool_dependencies.xml Wed Feb 01 10:00:22 2017 -0500 +++ b/tools/seq_composition/tool_dependencies.xml Wed May 10 13:03:42 2017 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="biopython" version="1.64"> - <repository changeset_revision="0c7526e8ea70" name="package_biopython_1_64" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="biopython" version="1.67"> + <repository changeset_revision="a42f244cce44" name="package_biopython_1_67" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>