Mercurial > repos > peterjc > seq_filter_by_mapping
changeset 5:1d6c149ca211 draft
Bump Biopython dependency
| author | peterjc |
|---|---|
| date | Thu, 30 Nov 2023 09:50:23 +0000 |
| parents | f82868a026ea |
| children | 566e456371c6 |
| files | tools/seq_filter_by_mapping/README.rst tools/seq_filter_by_mapping/seq_filter_by_mapping.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/tools/seq_filter_by_mapping/README.rst Fri Apr 16 22:22:47 2021 +0000 +++ b/tools/seq_filter_by_mapping/README.rst Thu Nov 30 09:50:23 2023 +0000 @@ -1,7 +1,7 @@ Galaxy tool to filter FASTA, FASTQ or SFF sequences by SAM/BAM mapping ====================================================================== -This tool is copyright 2014-2017 by Peter Cock, The James Hutton Institute +This tool is copyright 2014-2023 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. @@ -72,6 +72,7 @@ - Single quote command line arguments (internal change only). v0.0.6 - Python 3 compatible print function. v0.0.7 - Script works on Python 2 and 3 (fixed input file mode) +v0.0.8 - Bumped Biopython dependency version for Python 3 fixes. ======= ======================================================================
--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Apr 16 22:22:47 2021 +0000 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Thu Nov 30 09:50:23 2023 +0000 @@ -1,7 +1,7 @@ -<tool id="seq_filter_by_mapping" name="Filter sequences by mapping" version="0.0.7"> +<tool id="seq_filter_by_mapping" name="Filter sequences by mapping" version="0.0.8"> <description>from SAM/BAM file</description> <requirements> - <requirement type="package" version="1.67">biopython</requirement> + <requirement type="package" version="1.81">biopython</requirement> <requirement type="package" version="0.1.19">samtools</requirement> </requirements> <version_command>