Mercurial > repos > petr-novak > repeatexplorer2_testing

changeset 11:1d1dc045695e draft

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Uploaded
author petr-novak
date Thu, 27 Jul 2023 08:35:12 +0000
parents 3c121bee9253
children a205a0b8963a
files repex_tarean.xml
diffstat 1 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/repex_tarean.xml	Thu Jul 27 08:34:54 2023 +0000
+++ b/repex_tarean.xml	Thu Jul 27 08:35:12 2023 +0000
@@ -34,16 +34,16 @@
     zip -r  ${ReportArchive}.zip * &&
     mv ${ReportArchive}.zip ${ReportArchive} &&
     cp index.html ${ReportFile} &&
-    mkdir ${ReportFile.files_path} &&
-    cp -r --parents libdir ${ReportFile.files_path} &&
-    cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &&
-    cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} &&
-    cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls &&
-    cp *.png ${ReportFile.files_path}/ &&
-    cp *.csv ${ReportFile.files_path}/ &&
-    cp *.html ${ReportFile.files_path}/  &&
-    cp *.css ${ReportFile.files_path}/  &&
-    cp *.fasta ${ReportFile.files_path}/ 2>>$log  && rm -r ../tarean_output || :
+    mkdir -p ${ReportFile.extra_files_path} &&
+    cp -r --parents libdir ${ReportFile.extra_files_path} &&
+    cp -r --parents seqclust/clustering/superclusters ${ReportFile.extra_files_path} &&
+    cp -r --parents seqclust/clustering/clusters ${ReportFile.extra_files_path} &&
+    cp seqclust/clustering/hitsort.cls ${ReportFile.extra_files_path}/seqclust/clustering/hitsort.cls &&
+    cp *.png ${ReportFile.extra_files_path}/ &&
+    cp *.csv ${ReportFile.extra_files_path}/ &&
+    cp *.html ${ReportFile.extra_files_path}/  &&
+    cp *.css ${ReportFile.extra_files_path}/  &&
+    cp *.fasta ${ReportFile.extra_files_path}/ 2>>$log  && rm -r ../tarean_output || :
 
     
   </command>