Mercurial > repos > petr-novak > repeatexplorer2_testing

changeset 5:397394c00bf7 draft

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Uploaded
author petr-novak
date Fri, 09 Apr 2021 08:09:53 +0000
parents 72c028e3e70e
children 4b3af335dca8
files repex_full_clustering.xml repex_tarean.xml
diffstat 2 files changed, 44 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/repex_full_clustering.xml	Thu Apr 08 10:31:53 2021 +0000
+++ b/repex_full_clustering.xml	Fri Apr 09 08:09:53 2021 +0000
@@ -130,7 +130,28 @@
     </when>
   </conditional>
 
-  
+       <conditional name="queue_definition">
+               <param name="queue_select" type="select" label="Select queue">
+                 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option>
+                 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option>
+                 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option>
+               </param>
+               <when value="basic_fast_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" />
+               </when>
+
+               <when value="long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+               <when value="extra_long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+     </conditional>
+ 
+
 
  </inputs>
     <outputs>
--- a/repex_tarean.xml	Thu Apr 08 10:31:53 2021 +0000
+++ b/repex_tarean.xml	Fri Apr 09 08:09:53 2021 +0000
@@ -97,7 +97,28 @@
       </when>
     </conditional>
 
-    
+         <conditional name="queue_definition">
+               <param name="queue_select" type="select" label="Select queue">
+                 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option>
+                 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option>
+                 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option>
+               </param>
+               <when value="basic_fast_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" />
+               </when>
+
+               <when value="long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+               <when value="extra_long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+     </conditional>
+ 
+
 
   </inputs>
   <outputs>