Mercurial > repos > pieterlukasse > prims_metabolomics

changeset 42:664ccd5f7cf8

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small fix for png method
author pieter.lukasse@wur.nl
date Fri, 07 Nov 2014 11:45:16 +0100
parents e67149fbff20
children eb0e25d06060
files README.rst metaMS_cmd_interface.r
diffstat 2 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Thu Nov 06 16:14:44 2014 +0100
+++ b/README.rst	Fri Nov 07 11:45:16 2014 +0100
@@ -19,6 +19,7 @@
 ============== ======================================================================
 Date            Changes
 -------------- ----------------------------------------------------------------------
+November 2014  * Added XCMS related tool wrappers (for metaMS and diffreport)
 September 2014 * Added new membership cutoff option for final clusters in MsClust
                * Improved MsClust memory usage for large datasets 
                * Simplified MsClust HTML report
--- a/metaMS_cmd_interface.r	Thu Nov 06 16:14:44 2014 +0100
+++ b/metaMS_cmd_interface.r	Fri Nov 07 11:45:16 2014 +0100
@@ -76,7 +76,7 @@
 				{
 					figureName <- paste(args.htmlReportFile.files_path, "/figure", i,".png", sep="")
 					html <- paste(html,"<img src='", "figure", i,".png' />", sep="") 
-					png( figureName ) 
+					png( figureName, type="cairo" ) 
 					plot(eiccor, LC$xset@xcmsSet, groupidx = i)
 					devname = dev.off()
 				}