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comparison rnachipintegrator_canonical_genes.xml @ 6:466c68008537 draft default tip

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Updated for RnaChipIntegrator 3.0.0.
author pjbriggs
date Wed, 20 Mar 2024 09:11:04 +0000
parents b695071de766
children
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5:087d9872fb0d 6:466c68008537
3 <macros> 3 <macros>
4 <import>rnachipintegrator_macros.xml</import> 4 <import>rnachipintegrator_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="version_command" /> 7 <expand macro="version_command" />
8 <command interpreter="bash"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 rnachipintegrator_wrapper.sh 9 bash $__tool_directory__/rnachipintegrator_wrapper.sh
10 #if $peaks_in.metadata.chromCol 10 #if $peaks_in.metadata.chromCol
11 --peak_cols=${peaks_in.metadata.chromCol},${peaks_in.metadata.startCol},${peaks_in.metadata.endCol} 11 --peak_cols=${peaks_in.metadata.chromCol},${peaks_in.metadata.startCol},${peaks_in.metadata.endCol}
12 #end if 12 #end if
13 #if str( $cutoff ) != "" 13 #if str( $cutoff ) != ""
14 --cutoff=$cutoff 14 --cutoff=$cutoff