Mercurial > repos > pjbriggs > weeder2
comparison tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft
Updated to tool version 2.0.1 (use data table to locate freqfiles).
author | pjbriggs |
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date | Fri, 27 Nov 2015 11:06:28 -0500 |
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1:571cb77ab9e7 | 2:3c5f10f7dd40 |
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1 # This is a sample file distributed with Galaxy that is used by the | |
2 # weeder2 tool to find the frequency files. | |
3 # | |
4 # The weeder.loc file has this format (white space characters are TAB | |
5 # characters): | |
6 # | |
7 #<species_code> <Description> <PathToFreqFilesDir> | |
8 # | |
9 # <PathToFreqFilesDir> should be a period ('.') to indicate the | |
10 # frequency files that come as standard with weeder2; otherwise | |
11 # it should be the full path to the directory holding a custom | |
12 # set of .freq files. | |
13 # | |
14 # For example: | |
15 # | |
16 #AF Aspergillus fumigatus (AF) /home/galaxy/weeder/FreqFiles | |
17 # | |
18 # where '/home/galaxy/weeder/FreqFiles' would contain: | |
19 # | |
20 #-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq | |
21 #-rw-rw-r-- 1 pjb pjb 47080 Oct 23 13:15 AF_ds.6.freq | |
22 #-rw-rw-r-- 1 pjb pjb 1006374 Oct 23 13:15 AF_ds.8.freq | |
23 #-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq | |
24 #-rw-rw-r-- 1 pjb pjb 45262 Oct 23 13:16 AF_ss.6.freq | |
25 #-rw-rw-r-- 1 pjb pjb 984583 Oct 23 13:16 AF_ss.8.freq | |
26 # | |
27 # Entries are already provided for the standard frequency files that | |
28 # are distributed with Weeder2. | |
29 # This file should be placed in galaxy's tool-data directory when the | |
30 # weeder2 tool is installed. | |
31 HS Homo sapiens (HS) . | |
32 MM Mus musculus (MM) . | |
33 DM Drosophila melanogaster (DM) . | |
34 SC Saccharomyces cerevisiae (SC) . | |
35 AT Arabidopsis thaliana (AT) . |