Mercurial > repos > portiahollyoak > twobit_to_fasta
annotate twobit_to_fasta.xml @ 2:4d4cfa3a59db draft default tip
planemo upload for repository https://github.com/portiahollyoak/Tools commit edf843bf10fa262f075980626a9201078f868757
author | mvdbeek |
---|---|
date | Wed, 17 Aug 2016 11:51:28 -0400 |
parents | 290689b572b3 |
children |
rev | line source |
---|---|
1
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
1 <tool id ="2bit_to_fasta" name="Convert 2bit to fasta format" version=" 0.1.0"> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
2 <description></description> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
3 <requirements> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
4 <requirement type="package" version="latest">twoBitToFa</requirement> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
5 </requirements> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
6 <stdio> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
7 <exit_code range="1:" /> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
8 </stdio> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
9 <command>twoBitToFa "$input1" "$output" </command> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
10 <inputs> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
11 <param format="twobit" name="input1" type="data" label="twobit File"/> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
12 </inputs> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
13 <outputs> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
14 <data format="fasta" name="output" /> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
15 </outputs> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
16 <tests> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
17 <test> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
18 <param name="input1" value="dm3_chr2L.2bit" ftype="twobit"/> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
19 <output name="output" file="output.fasta"/> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
20 </test> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
21 </tests> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
22 <help> <![CDATA[ |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
23 |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
24 This tool takes an input 2bit file and converts it into fasta format. |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
25 |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
26 ]]> </help> |
290689b572b3
planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
portiahollyoak
parents:
diff
changeset
|
27 </tool> |