annotate twobit_to_fasta.xml @ 1:290689b572b3 draft

planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a

<tool id ="2bit_to_fasta" name="Convert 2bit to fasta format" version=" 0.1.0">
    <description></description>
    <requirements>
        <requirement type="package" version="latest">twoBitToFa</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command>twoBitToFa "$input1" "$output" </command>
    <inputs>
        <param format="twobit" name="input1" type="data" label="twobit File"/>
    </inputs>
    <outputs>
        <data format="fasta" name="output" />
    </outputs>
    <tests>
        <test>
            <param name="input1" value="dm3_chr2L.2bit" ftype="twobit"/>
            <output name="output" file="output.fasta"/>
        </test>
    </tests>
    <help> <![CDATA[

This tool takes an input 2bit file and converts it into fasta format.

    ]]> </help>
</tool>