diff twobit_to_fasta.xml @ 1:290689b572b3 draft

planemo upload for repository https://github.com/portiahollyoak/Tools commit c843a15727005c5e5fb47c26a63e80412b62f03a
author portiahollyoak
date Thu, 28 Apr 2016 08:08:11 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/twobit_to_fasta.xml	Thu Apr 28 08:08:11 2016 -0400
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+<tool id ="2bit_to_fasta" name="Convert 2bit to fasta format" version=" 0.1.0">
+    <description></description>
+    <requirements>
+        <requirement type="package" version="latest">twoBitToFa</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command>twoBitToFa "$input1" "$output" </command>
+    <inputs>
+        <param format="twobit" name="input1" type="data" label="twobit File"/>
+    </inputs>
+    <outputs>
+        <data format="fasta" name="output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="dm3_chr2L.2bit" ftype="twobit"/>
+            <output name="output" file="output.fasta"/>
+        </test>
+    </tests>
+    <help> <![CDATA[
+
+This tool takes an input 2bit file and converts it into fasta format.
+
+    ]]> </help>
+</tool>
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