Mercurial > repos > ppericard > viscorvar
annotate viscorvar_computematsimilarity.xml @ 4:d4e9f7546dfa draft
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author | ppericard |
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date | Tue, 17 Nov 2020 13:01:44 +0000 |
parents | c8533e9298e5 |
children | 88c1fd2ac110 |
rev | line source |
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4
d4e9f7546dfa
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
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1 <tool id="viscorvar_computematsimilarity" name="visCorVar computeMatSimilarity" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true"> |
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c8533e9298e5
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2 |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description> |
c8533e9298e5
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c8533e9298e5
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5 <macros> |
c8533e9298e5
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6 <import>macros.xml</import> |
c8533e9298e5
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7 <import>macros_viscorvar.xml</import> |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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8 </macros> |
c8533e9298e5
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9 |
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10 <expand macro="requirements"/> |
c8533e9298e5
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11 <expand macro="stdio"/> |
c8533e9298e5
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12 |
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13 <command detect_errors="aggressive"><![CDATA[ |
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14 |
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15 @COMMAND_RSCRIPT@/viscorvar_computematsimilarity.R |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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16 |
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17 --input_rdata ${input_rdata} |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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18 |
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19 --output_rdata ${output_rdata} |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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20 |
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21 @COMMAND_LOG_EXIT@ |
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22 |
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23 ]]></command> |
c8533e9298e5
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24 <inputs> |
c8533e9298e5
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25 <param name="input_rdata" type="data" format="rdata" |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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26 label="Input RData file" |
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d4e9f7546dfa
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27 help="this is the RData output file from matCorAddVar function"/> |
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28 </inputs> |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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29 |
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30 <outputs> |
c8533e9298e5
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31 <data name="output_rdata" format="rdata" label="${tool.name}_output.RData" /> |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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32 </outputs> |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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33 |
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34 <tests> |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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35 </tests> |
c8533e9298e5
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36 |
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37 <help><![CDATA[ |
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38 |
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39 @HELP_AUTHORS@ |
c8533e9298e5
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40 |
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41 ============================== |
c8533e9298e5
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42 visCorVar computeMatSimilarity |
c8533e9298e5
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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43 ============================== |
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44 |
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45 ----------- |
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46 Description |
c8533e9298e5
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47 ----------- |
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48 |
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49 This tool is a pre-processing step in order to create networks. It computes an |
d4e9f7546dfa
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
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50 approximation of the correlation between a variable of a omics dataset and a variable of |
d4e9f7546dfa
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
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51 an other omics dataset. |
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52 |
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53 ----------------- |
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54 Workflow position |
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55 ----------------- |
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56 |
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57 **Upstream tools** |
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58 |
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59 ======================== ===================================== ======== |
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60 Name Output file Format |
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61 ======================== ===================================== ======== |
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62 visCorVar.matCorAddVar viscorvar_matcoraddvar_output.RData rdata |
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63 ======================== ===================================== ======== |
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64 |
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65 **Downstream tools** |
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66 |
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67 ====================== ============================================= ======== |
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68 Name Output file Format |
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69 ====================== ============================================= ======== |
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70 visCorVar.networkVar viscorvar_computematsimilarity_output.RData rdata |
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71 ====================== ============================================= ======== |
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72 |
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73 --------------------------------------------------- |
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74 |
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75 ----------- |
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76 Input files |
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77 ----------- |
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78 |
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79 +------------------------------------------+------------+ |
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80 | Parameter : num + label | Format | |
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81 +==========================================+============+ |
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82 | 1 : Rdata visCorVar.matCorAddVar output | Rdata | |
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83 +------------------------------------------+------------+ |
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84 |
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85 ---------- |
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86 Parameters |
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87 ---------- |
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88 |
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89 @HELP_MANUAL@ |
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90 |
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91 ------------ |
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92 Output files |
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93 ------------ |
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94 |
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95 viscorvar_computematsimilarity_output.RData |
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96 RData output |
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97 |
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98 ]]></help> |
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99 |
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100 <expand macro="citations" /> |
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101 |
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102 </tool> |