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"planemo upload commit 76293bd47447c171c939b4f3c194fd0cfbd7f69c-dirty"
author prog
date Thu, 04 Mar 2021 11:21:03 +0000
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1 Metabolights Downloader
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2 =======================
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4 [![Build Status](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld)
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6 A [Metabolights](http://www.ebi.ac.uk/metabolights/) study downloader for [Galaxy](https://galaxyproject.org/), part of the [Workflow4Metabolomics](http://workflow4metabolomics.org/) project, and developed during the [PhenoMeNal](http://phenomenal-h2020.eu/home/) project.
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8 For more information, see the galaxy tool page, help section, available inside `mtbls-dwnld_config.xml`.
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10 ## Requirements
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12 * Python 3.8
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13 * isatools 0.10.3
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14 * `unzip` program.
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15 * `wget` program.
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16 * `ascp` (Aspera secure copy) program, version 3.7.4 or greater, which you can download [here](http://downloads.asperasoft.com/en/downloads/62).
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18 ## Updates
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20 ### 4.1.4
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22 * Use MTBLS29 instead of MTBLS30, which has been removed from public repository, for testing.
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23 * Make planemo tests pass on Travis-CI.
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24 * Run several times ascp downloads for tests on Travis-CI, due to connection issues.
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26 ### 2.0.4
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28 * Test presence of downloader program.
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29 * Correct running of `wget`.
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31 ### 2.0.3
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33 * Allow to choose the downloading method (`wget` or `aspera`).
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34 * Ask to specify is the study to download is public or private.
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35 * Allow to download all assays at once and convert them to W4M format.
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36 * Allow to download *mzMl* and *mzData* files as collections.
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38 ### 1.3.0
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40 * Allow to choose the assay to extract and convert to W4M format.