Mercurial > repos > q2d2 > qiime2__phylogeny__filter_tree
changeset 3:fbdbfcbe5121 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:17:01 +0000 |
| parents | 97716f0bd25b |
| children | 6106d14aabd1 |
| files | qiime2__phylogeny__filter_tree.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza |
| diffstat | 2 files changed, 9 insertions(+), 9 deletions(-) [+] |
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--- a/qiime2__phylogeny__filter_tree.xml Thu Jun 08 19:49:48 2023 +0000 +++ b/qiime2__phylogeny__filter_tree.xml Thu Apr 25 21:17:01 2024 +0000 @@ -1,40 +1,40 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Remove features from tree based on metadata</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version phylogeny</version_command> <command detect_errors="exit_code">q2galaxy run phylogeny filter_tree '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted¹ | Unrooted²]" help="[required] Tree that should be filtered"> <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="Phylogeny[Unrooted]"/> <filter type="add_value" value="Phylogeny[Rooted]"/> - <filter type="add_value" value="Phylogeny[Unrooted]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table which contains the identifier that should be retained in the tree"> <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> + <filter type="add_value" value="FeatureTable[Composition]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> - <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> - <filter type="add_value" value="FeatureTable[Composition]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param>