Mercurial > repos > q2d2 > qiime2__quality_control__decontam_score_viz
changeset 1:4c42094885ac draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:18:52 +0000 |
| parents | a5c12b452094 |
| children | b9547e911efd |
| files | qiime2__quality_control__decontam_score_viz.xml |
| diffstat | 1 files changed, 8 insertions(+), 10 deletions(-) [+] |
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--- a/qiime2__quality_control__decontam_score_viz.xml Thu Jun 08 19:50:42 2023 +0000 +++ b/qiime2__quality_control__decontam_score_viz.xml Thu Apr 25 21:18:52 2024 +0000 @@ -1,37 +1,35 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Generate a histogram representation of the scores</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version quality_control</version_command> <command detect_errors="exit_code">q2galaxy run quality_control decontam_score_viz '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> - <param name="decontam_scores" type="data" format="qza" label="decontam_scores: FeatureData[DecontamScore]" help="[required] Output from decontam identify to be visualized"> + <param name="decontam_scores" type="data" format="qza" label="decontam_scores: Collection[FeatureData[DecontamScore]]" help="[required] Output from decontam identify to be visualized" multiple="true"> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="FeatureData[DecontamScore]"/> </options> - <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[DecontamScore]']</validator> </param> - <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] Raw OTU/ASV table that was used as input to decontam-identify"> + <param name="table" type="data" format="qza" label="table: Collection[FeatureTable[Frequency]]" help="[required] Raw OTU/ASV table that was used as input to decontam-identify" multiple="true"> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="FeatureTable[Frequency]"/> </options> - <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="threshold" type="float" value="0.1" label="threshold: Float" help="[default: 0.1] Select threshold cutoff for decontam algorithm scores"/>