Mercurial > repos > q2d2 > qiime2__quality_control__decontam_score_viz

changeset 2:b9547e911efd draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:30:19 +0000
parents 4c42094885ac
children 73408b72d0ef
files qiime2__quality_control__decontam_score_viz.xml
diffstat 1 files changed, 12 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__quality_control__decontam_score_viz.xml	Thu Apr 25 21:18:52 2024 +0000
+++ b/qiime2__quality_control__decontam_score_viz.xml	Mon Jun 03 23:30:19 2024 +0000
@@ -6,14 +6,14 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.2.1)
+    q2galaxy (version: 2024.5.0)
 for:
-    qiime2 (version: 2024.2.0)
+    qiime2 (version: 2024.5.0)
 -->
-<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
     <description>Generate a histogram representation of the scores</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
     </requirements>
     <version_command>q2galaxy version quality_control</version_command>
     <command detect_errors="exit_code">q2galaxy run quality_control decontam_score_viz '$inputs'</command>
@@ -32,9 +32,15 @@
             </options>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
-            <param name="threshold" type="float" value="0.1" label="threshold: Float" help="[default: 0.1]  Select threshold cutoff for decontam algorithm scores"/>
+            <param name="rep_seqs" type="data" format="qza" optional="true" label="rep_seqs: FeatureData[Sequence]" help="[optional]  Representative Sequences table which contaminate sequences will be removed from">
+                <options options_filter_attribute="metadata.semantic_type">
+                    <filter type="add_value" value="FeatureData[Sequence]"/>
+                </options>
+                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator>
+            </param>
+            <param name="threshold" type="float" min="0.0" max="1.0" value="0.1" label="threshold: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.1]  Select threshold cutoff for decontam algorithm scores"/>
             <param name="weighted" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="weighted: Bool" help="[default: Yes]  weight the decontam scores by their associated read number"/>
-            <param name="bin_size" type="float" value="0.02" label="bin_size: Float" help="[default: 0.02]  Select bin size for the histogram"/>
+            <param name="bin_size" type="float" min="0.0" max="1.0" value="0.02" label="bin_size: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.02]  Select bin size for the histogram"/>
         </section>
     </inputs>
     <outputs>