Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
comparison notes.txt @ 0:d55ad8533d58 draft default tip
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:d55ad8533d58 |
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| 1 -rw-r--r-- 1 rico rico 0 Feb 22 20:46 fasta_validation_log.txt | |
| 2 -rw-r--r-- 1 rico rico 15015 Feb 22 20:46 adapter_log.txt | |
| 3 -rw-r--r-- 1 rico rico 1996423 Feb 22 20:46 cleaned.fa | |
| 4 -rw-r--r-- 1 rico rico 36 Feb 22 20:46 adapter_report.tabular | |
| 5 | |
| 6 | |
| 7 <!-- | |
| 8 $DOCKER run --init --name $CONTAINER --user "$(id -u):$(id -g)" -v $FASTA_DIRNAME:/sample-volume/ \ | |
| 9 -v $EXPANDED_OUTPUT:/output-volume/ $DOCKER_IMAGE \ | |
| 10 /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME | |
| 11 | |
| 12 singularity run $CONTAINER \ | |
| 13 --bind $FASTA_DIRNAME:/sample-volume/ \ | |
| 14 --bind $EXPANDED_OUTPUT:/output-volume/ \ | |
| 15 $SINGULARITY_IMAGE \ | |
| 16 /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME | |
| 17 --> |