annotate notes.txt @ 0:d55ad8533d58 draft default tip

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
author richard-burhans
date Fri, 01 Mar 2024 18:26:57 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
1 -rw-r--r-- 1 rico rico 0 Feb 22 20:46 fasta_validation_log.txt
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
2 -rw-r--r-- 1 rico rico 15015 Feb 22 20:46 adapter_log.txt
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
3 -rw-r--r-- 1 rico rico 1996423 Feb 22 20:46 cleaned.fa
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
4 -rw-r--r-- 1 rico rico 36 Feb 22 20:46 adapter_report.tabular
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
5
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
6
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
7 <!--
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
8 $DOCKER run --init --name $CONTAINER --user "$(id -u):$(id -g)" -v $FASTA_DIRNAME:/sample-volume/ \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
9 -v $EXPANDED_OUTPUT:/output-volume/ $DOCKER_IMAGE \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
10 /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
11
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
12 singularity run $CONTAINER \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
13 --bind $FASTA_DIRNAME:/sample-volume/ \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
14 --bind $EXPANDED_OUTPUT:/output-volume/ \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
15 $SINGULARITY_IMAGE \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
16 /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
diff changeset
17 -->