diff tool_dependencies.xml @ 0:6ae946589f04 draft

initial Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Feb 22 06:21:02 2014 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <!-- blockbuster seems to have no version number, assuming a really small one -->
+    <package name="blockbuster" version="0.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>blockbuster.x</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
+        GCC is needed to compilte Blockbuster.
+        http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
+        </readme>
+    </package>
+</tool_dependency>