annotate tool_dependencies.xml @ 0:6ae946589f04 draft

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author rnateam
date Sat, 22 Feb 2014 06:21:02 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- blockbuster seems to have no version number, assuming a really small one -->
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4 <package name="blockbuster" version="0.0.1">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.tar.gz</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>blockbuster.x</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
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20 GCC is needed to compilte Blockbuster.
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21 http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
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22 </readme>
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23 </package>
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24 </tool_dependency>