Mercurial > repos > rnateam > epicseg
changeset 0:6260e42c7d49 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/epicseg commit 560df98ab92af885e9d2e909ee8709885e52cbd3
author | rnateam |
---|---|
date | Wed, 07 Mar 2018 16:56:29 -0500 |
parents | |
children | |
files | epicseg.R epicseg.xml macros.xml test-data/chr1.bed test-data/chr1_h1hesc_h3k27me3.bam test-data/chr1_h1hesc_h3k4me1.bam test-data/chr1_h1hesc_h3k4me1_rep2.bam test-data/chr1_h1hesc_h3k4me3.bam test-data/cpgIslandExt.hg19.bed test-data/report.html test-data/report_1ds.html test-data/report_1ds_w_annot.html test-data/report_2ds.html test-data/report_2ds_w_annot.html test-data/report_w_annot.html test-data/segmentation.bed test-data/segmentation_1ds.bed |
diffstat | 17 files changed, 4661 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/epicseg.R Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,4 @@ +#!/usr/bin/env Rscript + +library(epicseg) +epicseg:::CLI(args=commandArgs(trailingOnly=TRUE), epicseg:::getProg())
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/epicseg.xml Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,358 @@ +<tool id="epicseg_segment" name="EpiCSeg - Chromatin segmentation" version="@VERSION_STRING@"> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"><![CDATA[ + + mkdir -p '${ report.files_path }' && + + ## Acquire the count matrices + #for $d, $dataset in enumerate( $datasets ): + #for $i, $mark in enumerate( $dataset.marks ): + ln -s -f '${mark.reads}' '${d}_${i}.bam' && + ln -s -f '${mark.reads.metadata.bam_index}' '${d}_${i}.bam.bai' && + #end for + + Rscript '${__tool_directory__}/epicseg.R' getcounts + --binsize $binsize --nthreads \${GALAXY_SLOTS:-2} + --regions '$regions' --target '${d}.tab' + + #for $i, $mark in enumerate( $dataset.marks): + --mark '${mark.label}:${d}_${i}.bam' --mapq ${mark.mapq} + ${mark.pairedend} --shift ${mark.shift} + #end for + + && + #end for + + ## Normalize the datasets + #if len( $datasets ) == 1: + ln -s 0.tab 0_norm.tab + #else: + Rscript '${__tool_directory__}/epicseg.R' normalizecounts + --nthreads \${GALAXY_SLOTS:-2} + + #for $d, $dataset in enumerate( $datasets) + --counts '${d}.tab' + #end for + + #end if + + && + + ## Segment + Rscript '${__tool_directory__}/epicseg.R' segment --regions '$regions' + --nstates $nstates --nthreads \${GALAXY_SLOTS:-2} + --outdir '${report.files_path}' + #for $d, $dataset in enumerate( $datasets ): + --counts '${dataset.name}:${d}_norm.tab' + #end for + + --maxiter $maxiter + + #for $annot in $annots: + --annot '${annot.name}:${annot.file}' + #end for# + && + cp ${report.files_path}/report.html . && + cp ${report.files_path}/segmentation*.bed . + ]]></command> + <inputs> + <param type="data" name="regions" format="bed" label="Regions in BED format" + help="BED file with the genomic regions of interest. + These regions will be automatically partitioned into + smaller, consecutive bins. Only the first three fields + in the file matter. If the region lengths are not + multiples of the given binsize a new bed file will be + produced where each coordinate is a multiple of binsize."/> + <param type="integer" name="binsize" min="0" value="200" + help="Size of a bin in base pairs. Each given region will + be partitioned into bins of this size."/> + <repeat name="datasets" title="Datasets" + help="Chromatin segmentation may be performed across one or more + datasets (e.g. cell-types or conditions) each + of which consisting + of a set of chromatin marks (e.g. H3K4me3). + If multiple datasets are used, + they must share the same set of chromatin marks."> + <param type="text" name="name" label="Dataset name" + value="Treatment" /> + <repeat name="marks" title="Chromatin mark"> + <param type="text" name="label" label="Mark name" + value="H3K4me3" /> + <param type="data" name="reads" label="Reads in BAM format" + format="bam" + help="BAM file containing the read alignments for + the corresponding chromatin mark. + If the same mark name is used multiple times, + the associated reads will be treated as replicates + and collapsed into one experiment."/> + <param type="integer" name="mapq" min="0" value="0" + help="Minimum mapping quality for the reads (see the + bam format specification for the mapq field). + Only reads with the mapq field above or equal + to the specified value will be considered."/> + <param type="boolean" name="pairedend" + truevalue="--pairedend TRUE" falsevalue="--pairedend FALSE" + help="Set this option to TRUE or FALSE to activate or + deactivate the paired-end mode. Only read pairs + where both ends are mapped will be considered and + assigned to the bin where the midpoint of the + read pair is located. If this flag is set, the + `shift` option will be ignored."/> + <param type="integer" name="shift" value="75" + help="Shift the reads in the 5' direction by a fixed + number of base pairs. The read will be assigned + to the bin where the shifted 5' end of the read + is located. This option will be ignored in + paired-end mode."/> + </repeat> + </repeat> + + + <param type="integer" name="nstates" label="Number of states" + min="0" value="5" + help="Number of chromatin states."/> + <param type="integer" name="maxiter" value="200" + help="Maximum number of iterations during training."/> + + <repeat name="annots" title="Annotation" + help="(Optional) Annotation tracks might be overlayed + with the segmentation results."> + <param type="text" name="name" label="Annotation name" + value="genes" /> + <param type="data" name="file" label="Annotation" + format="bed" + help="BED-file containing the annotation. For example, + gene annotation or CpG-islands." /> + </repeat> + </inputs> + <outputs> + <data name="report" format="html" from_work_dir='report.html' > + <discover_datasets pattern="segmentation" format="bed" + visible="true" /> + </data> + </outputs> + <tests> + <test> + <!-- 1 Dataset w/o annotation --> + <param name="regions" value="chr1.bed"/> + <repeat name="datasets"> + <param name="name" value="DS1" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1_rep2.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <param name="binsize" value="200" /> + <param name="nstates" value="5" /> + <output name="report" file="report_1ds.html"/> + </test> + <test> + <!-- 1 Dataset with annotation --> + <param name="regions" value="chr1.bed"/> + <repeat name="datasets"> + <param name="name" value="DS1" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1_rep2.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <param name="binsize" value="200" /> + <param name="nstates" value="5" /> + <repeat name="annots"> + <param name="name" value="cpg" /> + <param name="file" value="cpgIslandExt.hg19.bed" /> + </repeat> + <output name="report" file="report_1ds_w_annot.html"/> + </test> + + <test> + <!-- 2 Datasets w/o annotation --> + <param name="regions" value="chr1.bed"/> + <repeat name="datasets"> + <param name="name" value="DS1" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <repeat name="datasets"> + <param name="name" value="DS2" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1_rep2.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <param name="binsize" value="200" /> + <param name="nstates" value="5" /> + <output name="report" file="report_2ds.html"/> + </test> + + <test> + <!-- 2 Datasets with annotation --> + <param name="regions" value="chr1.bed"/> + <repeat name="datasets"> + <param name="name" value="DS1" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <repeat name="datasets"> + <param name="name" value="DS2" /> + <repeat name="marks"> + <param name="label" value="H3K4me3" /> + <param name="reads" value="chr1_h1hesc_h3k4me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H3K4me1" /> + <param name="reads" value="chr1_h1hesc_h3k4me1_rep2.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + <repeat name="marks"> + <param name="label" value="H4K27me3" /> + <param name="reads" value="chr1_h1hesc_h3k27me3.bam" /> + <param name="mapq" value="0"/> + <param name="pairedend" value="--pairedend FALSE"/> + <param name="shift" value="75"/> + </repeat> + </repeat> + <param name="binsize" value="200" /> + <param name="nstates" value="5" /> + <repeat name="annots"> + <param name="name" value="cpg" /> + <param name="file" value="cpgIslandExt.hg19.bed" /> + </repeat> + <output name="report" file="report_2ds_w_annot.html"/> + </test> + </tests> + <help><![CDATA[ +.. class:: infomark + +**What it does** + +**EpiCSeg - Chromatin segmentation** is a tool for performing chromatin segmentation. +It takes as input + + 1. one or more datasets (e.g. cell-types or conditions) + which consist of the next-generation sequencing alignments + (in bam format) for a common set of chromatin marks (e.g. H3K27me3, H3K4me3, etc.) + 2. a bed file containing the regions of interest + 3. (optional) a set of annotation files (in bed format) + against which the segmentation results are compared. + For example, CpG island annotation. + +It produces + + 1. an html report that summarizes the chromatin segmentation results + 2. a bed file per dataset that contains the chromatin segments. + + ]]></help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,15 @@ +<macros> + <token name="@VERSION_STRING@">1.0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION_STRING@">epicseg</requirement> + <yield /> + </requirements> + </xml> + + <xml name="citations"> + <citations> + <citation type="doi">10.1186/s13059-015-0708-z</citation> + </citations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chr1.bed Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,1 @@ +chr1 1000000 1500000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cpgIslandExt.hg19.bed Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,2462 @@ +chr1 28735 29810 CpG:116 1075 116 787 21.6 73.2 0.83 +chr1 135124 135563 CpG:30 439 30 295 13.7 67.2 0.64 +chr1 327790 328229 CpG:29 439 29 295 13.2 67.2 0.62 +chr1 437151 438164 CpG:84 1013 84 734 16.6 72.5 0.64 +chr1 449273 450544 CpG:99 1271 99 777 15.6 61.1 0.84 +chr1 533219 534114 CpG:94 895 94 570 21 63.7 1.04 +chr1 544738 546649 CpG:171 1911 171 1405 17.9 73.5 0.67 +chr1 713984 714547 CpG:60 563 60 385 21.3 68.4 0.92 +chr1 762416 763445 CpG:115 1029 115 673 22.4 65.4 1.07 +chr1 788863 789211 CpG:28 348 28 192 16.1 55.2 1.06 +chr1 801975 802338 CpG:24 363 24 243 13.2 66.9 0.79 +chr1 805198 805628 CpG:50 430 50 316 23.3 73.5 0.87 +chr1 839694 840619 CpG:83 925 83 525 17.9 56.8 1.11 +chr1 844299 845883 CpG:153 1584 153 1083 19.3 68.4 0.85 +chr1 854765 854973 CpG:16 208 16 140 15.4 67.3 0.68 +chr1 858970 861632 CpG:257 2662 257 1642 19.3 61.7 1.02 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229730617 CpG:21 276 21 166 15.2 60.1 0.84 +chr1 229761128 229762299 CpG:116 1171 116 710 19.8 60.6 1.09 +chr1 230202494 230204209 CpG:128 1715 128 923 14.9 53.8 1.03 +chr1 230415342 230415689 CpG:24 347 24 214 13.8 61.7 0.73 +chr1 230468504 230468850 CpG:25 346 25 222 14.5 64.2 0.7 +chr1 230492716 230492945 CpG:19 229 19 144 16.6 62.9 0.84 +chr1 230561103 230562702 CpG:152 1599 152 911 19 57 1.17 +chr1 230778077 230778593 CpG:58 516 58 358 22.5 69.4 0.93 +chr1 231003631 231004655 CpG:93 1024 93 623 18.2 60.8 1.01 +chr1 231113871 231114873 CpG:86 1002 86 617 17.2 61.6 0.91 +chr1 231175062 231176317 CpG:123 1255 123 735 19.6 58.6 1.14 +chr1 231176785 231177009 CpG:21 224 21 170 18.8 75.9 0.65 +chr1 231296559 231297345 CpG:57 786 57 503 14.5 64 0.71 +chr1 231297812 231299777 CpG:209 1965 209 1409 21.3 71.7 0.83 +chr1 231376796 231377243 CpG:41 447 41 296 18.3 66.2 0.84 +chr1 231473012 231474382 CpG:116 1370 116 832 16.9 60.7 0.92 +chr1 231556681 231558447 CpG:179 1766 179 1100 20.3 62.3 1.05 +chr1 231663999 231664608 CpG:56 609 56 375 18.4 61.6 0.97 +chr1 231762414 231763115 CpG:63 701 63 470 18 67 0.8 +chr1 232765088 232766479 CpG:149 1391 149 849 21.4 61 1.16 +chr1 232941054 232941707 CpG:69 653 69 432 21.1 66.2 0.98 +chr1 233086191 233086595 CpG:40 404 40 285 19.8 70.5 0.8 +chr1 233121927 233122136 CpG:18 209 18 143 17.2 68.4 0.78 +chr1 233431149 233431540 CpG:38 391 38 255 19.4 65.2 0.92 +chr1 233463526 233464414 CpG:112 888 112 614 25.2 69.1 1.06 +chr1 233497707 233497917 CpG:17 210 17 129 16.2 61.4 0.92 +chr1 233749373 233750314 CpG:71 941 71 530 15.1 56.3 0.95 +chr1 234040298 234041457 CpG:126 1159 126 792 21.7 68.3 0.93 +chr1 234349884 234350471 CpG:63 587 63 433 21.5 73.8 0.81 +chr1 234367135 234367496 CpG:35 361 35 239 19.4 66.2 0.88 +chr1 234492484 234492860 CpG:32 376 32 242 17 64.4 0.82 +chr1 234508994 234509501 CpG:47 507 47 310 18.5 61.1 0.99 +chr1 234613936 234614972 CpG:147 1036 147 764 28.4 73.7 1.06 +chr1 234735534 234736120 CpG:69 586 69 377 23.5 64.3 1.14 +chr1 234744276 234747024 CpG:257 2748 257 1470 18.7 53.5 1.31 +chr1 235267554 235267829 CpG:30 275 30 173 21.8 62.9 1.1 +chr1 235291740 235292387 CpG:69 647 69 428 21.3 66.2 0.98 +chr1 235324264 235324717 CpG:46 453 46 293 20.3 64.7 1 +chr1 235490338 235492160 CpG:166 1822 166 1203 18.2 66 0.84 +chr1 235667089 235668619 CpG:162 1530 162 1068 21.2 69.8 0.87 +chr1 235805318 235805771 CpG:35 453 35 276 15.5 60.9 0.83 +chr1 235811841 235814066 CpG:203 2225 203 1344 18.2 60.4 1 +chr1 235814280 235814488 CpG:15 208 15 122 14.4 58.7 0.85 +chr1 236029587 236030597 CpG:105 1010 105 697 20.8 69 0.88 +chr1 236156873 236157271 CpG:37 398 37 264 18.6 66.3 0.85 +chr1 236227682 236228817 CpG:123 1135 123 779 21.7 68.6 0.92 +chr1 236304758 236305025 CpG:23 267 23 180 17.2 67.4 0.76 +chr1 236305534 236306674 CpG:98 1140 98 668 17.2 58.6 1 +chr1 236444603 236445700 CpG:115 1097 115 759 21 69.2 0.88 +chr1 236511353 236511777 CpG:37 424 37 286 17.5 67.5 0.77 +chr1 236558459 236559336 CpG:99 877 99 604 22.6 68.9 0.96 +chr1 236687071 236687608 CpG:49 537 49 365 18.2 68 0.8 +chr1 236767361 236767998 CpG:44 637 44 350 13.8 54.9 0.93 +chr1 236849472 236850323 CpG:84 851 84 503 19.7 59.1 1.13 +chr1 236958314 236959202 CpG:84 888 84 571 18.9 64.3 0.92 +chr1 237205126 237206644 CpG:170 1518 170 1061 22.4 69.9 0.94 +chr1 237947187 237947448 CpG:22 261 22 134 16.9 51.3 1.29 +chr1 239550108 239551339 CpG:113 1231 113 789 18.4 64.1 0.91 +chr1 240160837 240161616 CpG:105 779 105 593 27 76.1 0.93 +chr1 240254959 240257063 CpG:194 2104 194 1395 18.4 66.3 0.84 +chr1 240370859 240371526 CpG:48 667 48 481 14.4 72.1 0.69 +chr1 240569320 240569679 CpG:26 359 26 245 14.5 68.2 0.82 +chr1 240656253 240656720 CpG:39 467 39 304 16.7 65.1 0.79 +chr1 240986654 240986909 CpG:29 255 29 185 22.7 72.5 0.87 +chr1 241520103 241520790 CpG:89 687 89 499 25.9 72.6 0.98 +chr1 241587601 241587883 CpG:28 282 28 202 19.9 71.6 0.78 +chr1 241682473 241683112 CpG:76 639 76 472 23.8 73.9 0.87 +chr1 241802960 241803649 CpG:45 689 45 369 13.1 53.6 0.95 +chr1 242011151 242011744 CpG:57 593 57 385 19.2 64.9 0.92 +chr1 242220284 242220615 CpG:29 331 29 238 17.5 71.9 0.68 +chr1 242220749 242221000 CpG:19 251 19 168 15.1 66.9 0.69 +chr1 242686916 242687476 CpG:42 560 42 339 15 60.5 0.83 +chr1 242687922 242688682 CpG:60 760 60 453 15.8 59.6 0.9 +chr1 243053597 243054072 CpG:43 475 43 343 18.1 72.2 0.7 +chr1 243264940 243265196 CpG:34 256 34 174 26.6 68 1.15 +chr1 243417741 243418775 CpG:89 1034 89 646 17.2 62.5 0.88 +chr1 243637639 243638142 CpG:48 503 48 362 19.1 72 0.74 +chr1 243646394 243646888 CpG:54 494 54 363 21.9 73.5 0.82 +chr1 243650990 243651529 CpG:38 539 38 363 14.1 67.3 0.64 +chr1 243652413 243652763 CpG:28 350 28 225 16 64.3 0.81 +chr1 244012712 244013245 CpG:49 533 49 346 18.4 64.9 0.9 +chr1 244013802 244014592 CpG:70 790 70 472 17.7 59.7 1 +chr1 244080540 244081093 CpG:55 553 55 353 19.9 63.8 0.98 +chr1 244094755 244095117 CpG:26 362 26 236 14.4 65.2 0.68 +chr1 244142851 244143055 CpG:14 204 14 148 13.7 72.5 0.68 +chr1 244211034 244212088 CpG:102 1054 102 686 19.4 65.1 0.92 +chr1 244213397 244213619 CpG:16 222 16 131 14.4 59 0.83 +chr1 244218274 244218538 CpG:26 264 26 170 19.7 64.4 0.96 +chr1 244614522 244615601 CpG:104 1079 104 726 19.3 67.3 0.86 +chr1 244624501 244624920 CpG:47 419 47 305 22.4 72.8 0.85 +chr1 244816199 244817080 CpG:91 881 91 593 20.7 67.3 0.91 +chr1 244893441 244894366 CpG:92 925 92 591 19.9 63.9 0.99 +chr1 244998023 244999142 CpG:101 1119 101 667 18.1 59.6 1.02 +chr1 245026434 245028020 CpG:186 1586 186 1056 23.5 66.6 1.09 +chr1 245133028 245134711 CpG:148 1683 148 1018 17.6 60.5 0.97 +chr1 245316547 245320247 CpG:324 3700 324 2364 17.5 63.9 0.86 +chr1 245498883 245499218 CpG:23 335 23 215 13.7 64.2 0.73 +chr1 245740993 245741204 CpG:17 211 17 129 16.1 61.1 0.86 +chr1 245753399 245753636 CpG:26 237 26 187 21.9 78.9 0.73 +chr1 245836323 245836747 CpG:38 424 38 301 17.9 71 0.76 +chr1 245848539 245849103 CpG:43 564 43 375 15.2 66.5 0.69 +chr1 245851177 245852514 CpG:118 1337 118 932 17.7 69.7 0.73 +chr1 246137775 246139559 CpG:132 1784 132 1136 14.8 63.7 0.74 +chr1 246414748 246415569 CpG:70 821 70 520 17.1 63.3 0.85 +chr1 246670148 246670768 CpG:74 620 74 448 23.9 72.3 0.91 +chr1 246729207 246730276 CpG:96 1069 96 691 18 64.6 0.86 +chr1 246783197 246783917 CpG:42 720 42 418 11.7 58.1 0.7 +chr1 246887264 246888028 CpG:68 764 68 467 17.8 61.1 0.95 +chr1 246952214 246952511 CpG:34 297 34 214 22.9 72.1 0.91 +chr1 247094485 247095667 CpG:137 1182 137 790 23.2 66.8 1.04 +chr1 247170868 247171434 CpG:53 566 53 396 18.7 70 0.78 +chr1 247241579 247242201 CpG:55 622 55 422 17.7 67.8 0.77 +chr1 247267179 247267884 CpG:54 705 54 447 15.3 63.4 0.76 +chr1 247274585 247275757 CpG:140 1172 140 894 23.9 76.3 0.83 +chr1 247279204 247279461 CpG:17 257 17 181 13.2 70.4 0.63 +chr1 247289663 247290225 CpG:60 562 60 388 21.4 69 0.9 +chr1 247334820 247335382 CpG:60 562 60 388 21.4 69 0.9 +chr1 247373735 247374304 CpG:46 569 46 393 16.2 69.1 0.68 +chr1 247463848 247464710 CpG:61 862 61 542 14.2 62.9 0.72 +chr1 247494249 247495840 CpG:163 1591 163 1025 20.5 64.4 0.99 +chr1 247614695 247614944 CpG:17 249 17 155 13.7 62.2 0.71 +chr1 247681399 247681951 CpG:65 552 65 394 23.6 71.4 0.93 +chr1 247694035 247694501 CpG:51 466 51 345 21.9 74 0.8 +chr1 247802738 247803141 CpG:52 403 52 305 25.8 75.7 0.91 +chr1 248020330 248021252 CpG:101 922 101 618 21.9 67 0.98 +chr1 248100325 248100726 CpG:38 401 38 275 19 68.6 0.81 +chr1 248855030 248855470 CpG:49 440 49 319 22.3 72.5 0.85 +chr1 249106095 249106517 CpG:43 422 43 305 20.4 72.3 0.78 +chr1 249120450 249120731 CpG:33 281 33 182 23.5 64.8 1.12 +chr1 249132080 249133310 CpG:130 1230 130 859 21.1 69.8 0.87 +chr1 249141563 249142796 CpG:145 1233 145 854 23.5 69.3 0.99 +chr1 249152411 249153419 CpG:86 1008 86 645 17.1 64 0.83 +chr1 249167408 249168010 CpG:48 602 48 355 15.9 59 0.92 +chr1 249200252 249200721 CpG:58 469 58 327 24.7 69.7 1.05
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,16 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation.bed">segmentation as a .bed file</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_1ds.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,16 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation.bed">segmentation as a .bed file</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_1ds_w_annot.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,19 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation.bed">segmentation as a .bed file</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +<div><h2>3. Genomic annotations</h2><br><table> +<tr><td><a href="annot_cpg.txt"><img src="annot_cpg.png"></a></td></tr> +</table></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_2ds.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,17 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation_DS1.bed">segmentation as a .bed file (DS1)</a><br> +<a href="segmentation_DS2.bed">segmentation as a .bed file (DS2)</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_2ds_w_annot.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,20 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation_DS1.bed">segmentation as a .bed file (DS1)</a><br> +<a href="segmentation_DS2.bed">segmentation as a .bed file (DS2)</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +<div><h2>3. Genomic annotations</h2><br><table> +<tr><td><a href="annot_cpg.txt"><img src="annot_cpg.png"></a></td></tr> +</table></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_w_annot.html Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,19 @@ +<!DOCTYPE html> <html> +<head><title>EpiCSeg report</title></head> +<body><h1><center>EpiCSeg report</center></h1><br> +<center> +<div><h2>1. Model parameters</h2><br><a href="model.txt"><img src="nbs.png"></a> +<br> +<table> +<tr><td valign="top"><a href="model.txt"><img src="means.png"></a></td><td valign="top"><a href="lmeans.txt"><img src="lmeans.png"></a></td><td valign="top"><a href="model.txt"><img src="transP.png"></a></td></tr> +</table></div> +<div><h2>2. Segmentation</h2><br><a href="colors.txt">state colors</a> +<br> +<a href="segmentation.bed">segmentation as a .bed file</a> +<br> +<a href="table.txt"><img src="table.png"></a></div> +<div><h2>3. Genomic annotations</h2><br><table> +<tr><td><a href="annot_cpg.txt"><img src="annot_cpg.png"></a></td></tr> +</table></div> +</center> +</body> </html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/segmentation.bed Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,1441 @@ +chr1 1000000 1000200 3 0 . 1000000 1000200 31,120,180 +chr1 1000200 1003400 4 0 . 1000200 1003400 251,154,153 +chr1 1003400 1003800 2 0 . 1003400 1003800 166,206,227 +chr1 1003800 1005000 1 0 . 1003800 1005000 51,160,44 +chr1 1005000 1005400 2 0 . 1005000 1005400 166,206,227 +chr1 1005400 1006000 3 0 . 1005400 1006000 31,120,180 +chr1 1006000 1011000 4 0 . 1006000 1011000 251,154,153 +chr1 1011000 1014800 5 0 . 1011000 1014800 178,223,138 +chr1 1014800 1015600 2 0 . 1014800 1015600 166,206,227 +chr1 1015600 1016000 1 0 . 1015600 1016000 51,160,44 +chr1 1016000 1017000 2 0 . 1016000 1017000 166,206,227 +chr1 1017000 1020200 4 0 . 1017000 1020200 251,154,153 +chr1 1020200 1026400 5 0 . 1020200 1026400 178,223,138 +chr1 1026400 1029600 4 0 . 1026400 1029600 251,154,153 +chr1 1029600 1047000 5 0 . 1029600 1047000 178,223,138 +chr1 1047000 1048200 3 0 . 1047000 1048200 31,120,180 +chr1 1048200 1049800 4 0 . 1048200 1049800 251,154,153 +chr1 1049800 1050000 3 0 . 1049800 1050000 31,120,180 +chr1 1050000 1050400 2 0 . 1050000 1050400 166,206,227 +chr1 1050400 1052400 1 0 . 1050400 1052400 51,160,44 +chr1 1052400 1052600 2 0 . 1052400 1052600 166,206,227 +chr1 1052600 1057400 4 0 . 1052600 1057400 251,154,153 +chr1 1057400 1058600 3 0 . 1057400 1058600 31,120,180 +chr1 1058600 1058800 4 0 . 1058600 1058800 251,154,153 +chr1 1058800 1059000 3 0 . 1058800 1059000 31,120,180 +chr1 1059000 1061800 4 0 . 1059000 1061800 251,154,153 +chr1 1061800 1062200 5 0 . 1061800 1062200 178,223,138 +chr1 1062200 1062400 4 0 . 1062200 1062400 251,154,153 +chr1 1062400 1062600 5 0 . 1062400 1062600 178,223,138 +chr1 1062600 1064600 4 0 . 1062600 1064600 251,154,153 +chr1 1064600 1066200 5 0 . 1064600 1066200 178,223,138 +chr1 1066200 1067600 4 0 . 1066200 1067600 251,154,153 +chr1 1067600 1069000 3 0 . 1067600 1069000 31,120,180 +chr1 1069000 1071600 4 0 . 1069000 1071600 251,154,153 +chr1 1071600 1072000 3 0 . 1071600 1072000 31,120,180 +chr1 1072000 1073200 2 0 . 1072000 1073200 166,206,227 +chr1 1073200 1074400 3 0 . 1073200 1074400 31,120,180 +chr1 1074400 1074600 4 0 . 1074400 1074600 251,154,153 +chr1 1074600 1076000 5 0 . 1074600 1076000 178,223,138 +chr1 1076000 1081000 3 0 . 1076000 1081000 31,120,180 +chr1 1081000 1087200 4 0 . 1081000 1087200 251,154,153 +chr1 1087200 1090600 5 0 . 1087200 1090600 178,223,138 +chr1 1090600 1091800 4 0 . 1090600 1091800 251,154,153 +chr1 1091800 1092800 3 0 . 1091800 1092800 31,120,180 +chr1 1092800 1093000 2 0 . 1092800 1093000 166,206,227 +chr1 1093000 1093600 1 0 . 1093000 1093600 51,160,44 +chr1 1093600 1093800 2 0 . 1093600 1093800 166,206,227 +chr1 1093800 1094800 3 0 . 1093800 1094800 31,120,180 +chr1 1094800 1096200 4 0 . 1094800 1096200 251,154,153 +chr1 1096200 1098000 3 0 . 1096200 1098000 31,120,180 +chr1 1098000 1098600 2 0 . 1098000 1098600 166,206,227 +chr1 1098600 1099200 3 0 . 1098600 1099200 31,120,180 +chr1 1099200 1100400 2 0 . 1099200 1100400 166,206,227 +chr1 1100400 1103000 3 0 . 1100400 1103000 31,120,180 +chr1 1103000 1104800 4 0 . 1103000 1104800 251,154,153 +chr1 1104800 1106800 3 0 . 1104800 1106800 31,120,180 +chr1 1106800 1108400 4 0 . 1106800 1108400 251,154,153 +chr1 1108400 1108800 3 0 . 1108400 1108800 31,120,180 +chr1 1108800 1109600 2 0 . 1108800 1109600 166,206,227 +chr1 1109600 1110200 3 0 . 1109600 1110200 31,120,180 +chr1 1110200 1111600 4 0 . 1110200 1111600 251,154,153 +chr1 1111600 1112600 3 0 . 1111600 1112600 31,120,180 +chr1 1112600 1117800 4 0 . 1112600 1117800 251,154,153 +chr1 1117800 1118200 3 0 . 1117800 1118200 31,120,180 +chr1 1118200 1119800 4 0 . 1118200 1119800 251,154,153 +chr1 1119800 1131600 5 0 . 1119800 1131600 178,223,138 +chr1 1131600 1133800 4 0 . 1131600 1133800 251,154,153 +chr1 1133800 1134400 3 0 . 1133800 1134400 31,120,180 +chr1 1134400 1134800 4 0 . 1134400 1134800 251,154,153 +chr1 1134800 1136200 3 0 . 1134800 1136200 31,120,180 +chr1 1136200 1136400 2 0 . 1136200 1136400 166,206,227 +chr1 1136400 1137000 1 0 . 1136400 1137000 51,160,44 +chr1 1137000 1137200 2 0 . 1137000 1137200 166,206,227 +chr1 1137200 1138400 4 0 . 1137200 1138400 251,154,153 +chr1 1138400 1139400 3 0 . 1138400 1139400 31,120,180 +chr1 1139400 1141200 4 0 . 1139400 1141200 251,154,153 +chr1 1141200 1142400 2 0 . 1141200 1142400 166,206,227 +chr1 1142400 1142800 3 0 . 1142400 1142800 31,120,180 +chr1 1142800 1145400 4 0 . 1142800 1145400 251,154,153 +chr1 1145400 1149000 5 0 . 1145400 1149000 178,223,138 +chr1 1149000 1149400 4 0 . 1149000 1149400 251,154,153 +chr1 1149400 1150800 3 0 . 1149400 1150800 31,120,180 +chr1 1150800 1151800 4 0 . 1150800 1151800 251,154,153 +chr1 1151800 1165200 5 0 . 1151800 1165200 178,223,138 +chr1 1165200 1165600 3 0 . 1165200 1165600 31,120,180 +chr1 1165600 1166200 2 0 . 1165600 1166200 166,206,227 +chr1 1166200 1167400 1 0 . 1166200 1167400 51,160,44 +chr1 1167400 1169400 2 0 . 1167400 1169400 166,206,227 +chr1 1169400 1170200 3 0 . 1169400 1170200 31,120,180 +chr1 1170200 1172400 4 0 . 1170200 1172400 251,154,153 +chr1 1172400 1175800 3 0 . 1172400 1175800 31,120,180 +chr1 1175800 1181200 4 0 . 1175800 1181200 251,154,153 +chr1 1181200 1181600 3 0 . 1181200 1181600 31,120,180 +chr1 1181600 1183000 2 0 . 1181600 1183000 166,206,227 +chr1 1183000 1183800 4 0 . 1183000 1183800 251,154,153 +chr1 1183800 1186200 5 0 . 1183800 1186200 178,223,138 +chr1 1186200 1186800 4 0 . 1186200 1186800 251,154,153 +chr1 1186800 1190600 5 0 . 1186800 1190600 178,223,138 +chr1 1190600 1191600 4 0 . 1190600 1191600 251,154,153 +chr1 1191600 1195200 3 0 . 1191600 1195200 31,120,180 +chr1 1195200 1196400 4 0 . 1195200 1196400 251,154,153 +chr1 1196400 1200400 5 0 . 1196400 1200400 178,223,138 +chr1 1200400 1201000 3 0 . 1200400 1201000 31,120,180 +chr1 1201000 1206200 5 0 . 1201000 1206200 178,223,138 +chr1 1206200 1206600 2 0 . 1206200 1206600 166,206,227 +chr1 1206600 1207400 3 0 . 1206600 1207400 31,120,180 +chr1 1207400 1208200 2 0 . 1207400 1208200 166,206,227 +chr1 1208200 1210000 1 0 . 1208200 1210000 51,160,44 +chr1 1210000 1210400 2 0 . 1210000 1210400 166,206,227 +chr1 1210400 1211000 4 0 . 1210400 1211000 251,154,153 +chr1 1211000 1215800 5 0 . 1211000 1215800 178,223,138 +chr1 1215800 1217400 4 0 . 1215800 1217400 251,154,153 +chr1 1217400 1219000 5 0 . 1217400 1219000 178,223,138 +chr1 1219000 1223400 4 0 . 1219000 1223400 251,154,153 +chr1 1223400 1225600 5 0 . 1223400 1225600 178,223,138 +chr1 1225600 1226600 4 0 . 1225600 1226600 251,154,153 +chr1 1226600 1229000 3 0 . 1226600 1229000 31,120,180 +chr1 1229000 1229800 2 0 . 1229000 1229800 166,206,227 +chr1 1229800 1230200 3 0 . 1229800 1230200 31,120,180 +chr1 1230200 1233600 5 0 . 1230200 1233600 178,223,138 +chr1 1233600 1234200 4 0 . 1233600 1234200 251,154,153 +chr1 1234200 1235600 3 0 . 1234200 1235600 31,120,180 +chr1 1235600 1237000 4 0 . 1235600 1237000 251,154,153 +chr1 1237000 1240000 3 0 . 1237000 1240000 31,120,180 +chr1 1240000 1240600 2 0 . 1240000 1240600 166,206,227 +chr1 1240600 1241600 3 0 . 1240600 1241600 31,120,180 +chr1 1241600 1242600 2 0 . 1241600 1242600 166,206,227 +chr1 1242600 1245000 1 0 . 1242600 1245000 51,160,44 +chr1 1245000 1245600 2 0 . 1245000 1245600 166,206,227 +chr1 1245600 1246200 4 0 . 1245600 1246200 251,154,153 +chr1 1246200 1250000 5 0 . 1246200 1250000 178,223,138 +chr1 1250000 1251600 3 0 . 1250000 1251600 31,120,180 +chr1 1251600 1253200 5 0 . 1251600 1253200 178,223,138 +chr1 1253200 1254600 3 0 . 1253200 1254600 31,120,180 +chr1 1254600 1255000 4 0 . 1254600 1255000 251,154,153 +chr1 1255000 1256800 5 0 . 1255000 1256800 178,223,138 +chr1 1256800 1258200 4 0 . 1256800 1258200 251,154,153 +chr1 1258200 1259600 2 0 . 1258200 1259600 166,206,227 +chr1 1259600 1261000 1 0 . 1259600 1261000 51,160,44 +chr1 1261000 1261600 2 0 . 1261000 1261600 166,206,227 +chr1 1261600 1261800 4 0 . 1261600 1261800 251,154,153 +chr1 1261800 1264200 5 0 . 1261800 1264200 178,223,138 +chr1 1264200 1265000 4 0 . 1264200 1265000 251,154,153 +chr1 1265000 1266000 3 0 . 1265000 1266000 31,120,180 +chr1 1266000 1267200 4 0 . 1266000 1267200 251,154,153 +chr1 1267200 1272000 5 0 . 1267200 1272000 178,223,138 +chr1 1272000 1273000 4 0 . 1272000 1273000 251,154,153 +chr1 1273000 1274600 3 0 . 1273000 1274600 31,120,180 +chr1 1274600 1276800 4 0 . 1274600 1276800 251,154,153 +chr1 1276800 1278600 5 0 . 1276800 1278600 178,223,138 +chr1 1278600 1280400 4 0 . 1278600 1280400 251,154,153 +chr1 1280400 1282800 3 0 . 1280400 1282800 31,120,180 +chr1 1282800 1283800 2 0 . 1282800 1283800 166,206,227 +chr1 1283800 1284600 1 0 . 1283800 1284600 51,160,44 +chr1 1284600 1285000 2 0 . 1284600 1285000 166,206,227 +chr1 1285000 1285400 1 0 . 1285000 1285400 51,160,44 +chr1 1285400 1286600 5 0 . 1285400 1286600 178,223,138 +chr1 1286600 1287200 2 0 . 1286600 1287200 166,206,227 +chr1 1287200 1288800 3 0 . 1287200 1288800 31,120,180 +chr1 1288800 1291200 2 0 . 1288800 1291200 166,206,227 +chr1 1291200 1296200 3 0 . 1291200 1296200 31,120,180 +chr1 1296200 1296600 4 0 . 1296200 1296600 251,154,153 +chr1 1296600 1298200 3 0 . 1296600 1298200 31,120,180 +chr1 1298200 1299400 5 0 . 1298200 1299400 178,223,138 +chr1 1299400 1300000 4 0 . 1299400 1300000 251,154,153 +chr1 1300000 1306600 5 0 . 1300000 1306600 178,223,138 +chr1 1306600 1306800 4 0 . 1306600 1306800 251,154,153 +chr1 1306800 1308400 3 0 . 1306800 1308400 31,120,180 +chr1 1308400 1309800 2 0 . 1308400 1309800 166,206,227 +chr1 1309800 1311600 1 0 . 1309800 1311600 51,160,44 +chr1 1311600 1312000 2 0 . 1311600 1312000 166,206,227 +chr1 1312000 1312600 4 0 . 1312000 1312600 251,154,153 +chr1 1312600 1321600 5 0 . 1312600 1321600 178,223,138 +chr1 1321600 1322800 4 0 . 1321600 1322800 251,154,153 +chr1 1322800 1332800 5 0 . 1322800 1332800 178,223,138 +chr1 1332800 1333600 2 0 . 1332800 1333600 166,206,227 +chr1 1333600 1336000 1 0 . 1333600 1336000 51,160,44 +chr1 1336000 1336600 2 0 . 1336000 1336600 166,206,227 +chr1 1336600 1338600 3 0 . 1336600 1338600 31,120,180 +chr1 1338600 1340800 5 0 . 1338600 1340800 178,223,138 +chr1 1340800 1341000 4 0 . 1340800 1341000 251,154,153 +chr1 1341000 1341600 2 0 . 1341000 1341600 166,206,227 +chr1 1341600 1343800 1 0 . 1341600 1343800 51,160,44 +chr1 1343800 1345200 2 0 . 1343800 1345200 166,206,227 +chr1 1345200 1346000 5 0 . 1345200 1346000 178,223,138 +chr1 1346000 1346400 2 0 . 1346000 1346400 166,206,227 +chr1 1346400 1347400 3 0 . 1346400 1347400 31,120,180 +chr1 1347400 1351000 5 0 . 1347400 1351000 178,223,138 +chr1 1351000 1351600 3 0 . 1351000 1351600 31,120,180 +chr1 1351600 1352400 5 0 . 1351600 1352400 178,223,138 +chr1 1352400 1354200 4 0 . 1352400 1354200 251,154,153 +chr1 1354200 1355200 3 0 . 1354200 1355200 31,120,180 +chr1 1355200 1355800 2 0 . 1355200 1355800 166,206,227 +chr1 1355800 1358600 3 0 . 1355800 1358600 31,120,180 +chr1 1358600 1360600 4 0 . 1358600 1360600 251,154,153 +chr1 1360600 1362000 3 0 . 1360600 1362000 31,120,180 +chr1 1362000 1363000 2 0 . 1362000 1363000 166,206,227 +chr1 1363000 1363200 1 0 . 1363000 1363200 51,160,44 +chr1 1363200 1363400 2 0 . 1363200 1363400 166,206,227 +chr1 1363400 1363800 4 0 . 1363400 1363800 251,154,153 +chr1 1363800 1364000 3 0 . 1363800 1364000 31,120,180 +chr1 1364000 1365000 5 0 . 1364000 1365000 178,223,138 +chr1 1365000 1368400 3 0 . 1365000 1368400 31,120,180 +chr1 1368400 1370600 2 0 . 1368400 1370600 166,206,227 +chr1 1370600 1371800 1 0 . 1370600 1371800 51,160,44 +chr1 1371800 1372400 2 0 . 1371800 1372400 166,206,227 +chr1 1372400 1373400 3 0 . 1372400 1373400 31,120,180 +chr1 1373400 1375000 4 0 . 1373400 1375000 251,154,153 +chr1 1375000 1375600 5 0 . 1375000 1375600 178,223,138 +chr1 1375600 1377400 3 0 . 1375600 1377400 31,120,180 +chr1 1377400 1405200 5 0 . 1377400 1405200 178,223,138 +chr1 1405200 1405600 4 0 . 1405200 1405600 251,154,153 +chr1 1405600 1405800 5 0 . 1405600 1405800 178,223,138 +chr1 1405800 1406400 2 0 . 1405800 1406400 166,206,227 +chr1 1406400 1407400 1 0 . 1406400 1407400 51,160,44 +chr1 1407400 1407800 5 0 . 1407400 1407800 178,223,138 +chr1 1407800 1408600 1 0 . 1407800 1408600 51,160,44 +chr1 1408600 1440000 5 0 . 1408600 1440000 178,223,138 +chr1 1440000 1440200 4 0 . 1440000 1440200 251,154,153 +chr1 1440200 1440400 3 0 . 1440200 1440400 31,120,180 +chr1 1440400 1446000 5 0 . 1440400 1446000 178,223,138 +chr1 1446000 1446600 2 0 . 1446000 1446600 166,206,227 +chr1 1446600 1447800 1 0 . 1446600 1447800 51,160,44 +chr1 1447800 1470800 5 0 . 1447800 1470800 178,223,138 +chr1 1470800 1472000 4 0 . 1470800 1472000 251,154,153 +chr1 1472000 1472600 3 0 . 1472000 1472600 31,120,180 +chr1 1472600 1473400 4 0 . 1472600 1473400 251,154,153 +chr1 1473400 1474200 3 0 . 1473400 1474200 31,120,180 +chr1 1474200 1474800 2 0 . 1474200 1474800 166,206,227 +chr1 1474800 1476600 1 0 . 1474800 1476600 51,160,44 +chr1 1476600 1476800 2 0 . 1476600 1476800 166,206,227 +chr1 1476800 1477200 3 0 . 1476800 1477200 31,120,180 +chr1 1477200 1477800 4 0 . 1477200 1477800 251,154,153 +chr1 1477800 1486000 5 0 . 1477800 1486000 178,223,138 +chr1 1486000 1486200 4 0 . 1486000 1486200 251,154,153 +chr1 1486200 1486400 5 0 . 1486200 1486400 178,223,138 +chr1 1486400 1488200 4 0 . 1486400 1488200 251,154,153 +chr1 1488200 1501800 5 0 . 1488200 1501800 178,223,138 +chr1 1501800 1503600 3 0 . 1501800 1503600 31,120,180 +chr1 1503600 1504600 4 0 . 1503600 1504600 251,154,153 +chr1 1504600 1506000 3 0 . 1504600 1506000 31,120,180 +chr1 1506000 1508000 4 0 . 1506000 1508000 251,154,153 +chr1 1508000 1508200 3 0 . 1508000 1508200 31,120,180 +chr1 1508200 1508800 2 0 . 1508200 1508800 166,206,227 +chr1 1508800 1511000 1 0 . 1508800 1511000 51,160,44 +chr1 1511000 1511400 2 0 . 1511000 1511400 166,206,227 +chr1 1511400 1514800 4 0 . 1511400 1514800 251,154,153 +chr1 1514800 1521200 5 0 . 1514800 1521200 178,223,138 +chr1 1521200 1521400 4 0 . 1521200 1521400 251,154,153 +chr1 1521400 1522200 2 0 . 1521400 1522200 166,206,227 +chr1 1522200 1522800 4 0 . 1522200 1522800 251,154,153 +chr1 1522800 1526200 5 0 . 1522800 1526200 178,223,138 +chr1 1526200 1527200 4 0 . 1526200 1527200 251,154,153 +chr1 1527200 1529200 5 0 . 1527200 1529200 178,223,138 +chr1 1529200 1530200 4 0 . 1529200 1530200 251,154,153 +chr1 1530200 1532200 5 0 . 1530200 1532200 178,223,138 +chr1 1532200 1533600 3 0 . 1532200 1533600 31,120,180 +chr1 1533600 1534200 4 0 . 1533600 1534200 251,154,153 +chr1 1534200 1535200 2 0 . 1534200 1535200 166,206,227 +chr1 1535200 1535600 4 0 . 1535200 1535600 251,154,153 +chr1 1535600 1535800 2 0 . 1535600 1535800 166,206,227 +chr1 1535800 1536000 1 0 . 1535800 1536000 51,160,44 +chr1 1536000 1536400 2 0 . 1536000 1536400 166,206,227 +chr1 1536400 1539400 4 0 . 1536400 1539400 251,154,153 +chr1 1539400 1545000 5 0 . 1539400 1545000 178,223,138 +chr1 1545000 1547200 4 0 . 1545000 1547200 251,154,153 +chr1 1547200 1549400 5 0 . 1547200 1549400 178,223,138 +chr1 1549400 1549800 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1760800 1761200 31,120,180 +chr1 1761200 1764400 5 0 . 1761200 1764400 178,223,138 +chr1 1764400 1766200 3 0 . 1764400 1766200 31,120,180 +chr1 1766200 1766800 5 0 . 1766200 1766800 178,223,138 +chr1 1766800 1767200 4 0 . 1766800 1767200 251,154,153 +chr1 1767200 1773000 5 0 . 1767200 1773000 178,223,138 +chr1 1773000 1775200 3 0 . 1773000 1775200 31,120,180 +chr1 1775200 1775800 5 0 . 1775200 1775800 178,223,138 +chr1 1775800 1778000 4 0 . 1775800 1778000 251,154,153 +chr1 1778000 1779200 3 0 . 1778000 1779200 31,120,180 +chr1 1779200 1780000 4 0 . 1779200 1780000 251,154,153 +chr1 1780000 1780800 3 0 . 1780000 1780800 31,120,180 +chr1 1780800 1781000 4 0 . 1780800 1781000 251,154,153 +chr1 1781000 1783800 5 0 . 1781000 1783800 178,223,138 +chr1 1783800 1784200 4 0 . 1783800 1784200 251,154,153 +chr1 1784200 1786000 3 0 . 1784200 1786000 31,120,180 +chr1 1786000 1786800 5 0 . 1786000 1786800 178,223,138 +chr1 1786800 1788600 4 0 . 1786800 1788600 251,154,153 +chr1 1788600 1796600 3 0 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1823000 1823400 51,160,44 +chr1 1823400 1823800 2 0 . 1823400 1823800 166,206,227 +chr1 1823800 1827400 3 0 . 1823800 1827400 31,120,180 +chr1 1827400 1830400 4 0 . 1827400 1830400 251,154,153 +chr1 1830400 1831600 3 0 . 1830400 1831600 31,120,180 +chr1 1831600 1832600 4 0 . 1831600 1832600 251,154,153 +chr1 1832600 1833600 3 0 . 1832600 1833600 31,120,180 +chr1 1833600 1833800 4 0 . 1833600 1833800 251,154,153 +chr1 1833800 1837400 5 0 . 1833800 1837400 178,223,138 +chr1 1837400 1839800 3 0 . 1837400 1839800 31,120,180 +chr1 1839800 1840000 2 0 . 1839800 1840000 166,206,227 +chr1 1840000 1841200 1 0 . 1840000 1841200 51,160,44 +chr1 1841200 1841800 2 0 . 1841200 1841800 166,206,227 +chr1 1841800 1843200 3 0 . 1841800 1843200 31,120,180 +chr1 1843200 1845200 5 0 . 1843200 1845200 178,223,138 +chr1 1845200 1845600 4 0 . 1845200 1845600 251,154,153 +chr1 1845600 1849000 3 0 . 1845600 1849000 31,120,180 +chr1 1849000 1849600 2 0 . 1849000 1849600 166,206,227 +chr1 1849600 1849800 3 0 . 1849600 1849800 31,120,180 +chr1 1849800 1850000 2 0 . 1849800 1850000 166,206,227 +chr1 1850000 1850800 1 0 . 1850000 1850800 51,160,44 +chr1 1850800 1851400 2 0 . 1850800 1851400 166,206,227 +chr1 1851400 1852000 3 0 . 1851400 1852000 31,120,180 +chr1 1852000 1854800 4 0 . 1852000 1854800 251,154,153 +chr1 1854800 1855400 3 0 . 1854800 1855400 31,120,180 +chr1 1855400 1857400 4 0 . 1855400 1857400 251,154,153 +chr1 1857400 1860000 5 0 . 1857400 1860000 178,223,138 +chr1 1860000 1860600 4 0 . 1860000 1860600 251,154,153 +chr1 1860600 1860800 3 0 . 1860600 1860800 31,120,180 +chr1 1860800 1862200 4 0 . 1860800 1862200 251,154,153 +chr1 1862200 1869800 5 0 . 1862200 1869800 178,223,138 +chr1 1869800 1872000 4 0 . 1869800 1872000 251,154,153 +chr1 1872000 1873400 5 0 . 1872000 1873400 178,223,138 +chr1 1873400 1874200 4 0 . 1873400 1874200 251,154,153 +chr1 1874200 1874400 3 0 . 1874200 1874400 31,120,180 +chr1 1874400 1874600 4 0 . 1874400 1874600 251,154,153 +chr1 1874600 1875600 3 0 . 1874600 1875600 31,120,180 +chr1 1875600 1876000 2 0 . 1875600 1876000 166,206,227 +chr1 1876000 1879200 4 0 . 1876000 1879200 251,154,153 +chr1 1879200 1882200 5 0 . 1879200 1882200 178,223,138 +chr1 1882200 1883800 4 0 . 1882200 1883800 251,154,153 +chr1 1883800 1885200 5 0 . 1883800 1885200 178,223,138 +chr1 1885200 1891000 4 0 . 1885200 1891000 251,154,153 +chr1 1891000 1891200 3 0 . 1891000 1891200 31,120,180 +chr1 1891200 1891800 2 0 . 1891200 1891800 166,206,227 +chr1 1891800 1893800 3 0 . 1891800 1893800 31,120,180 +chr1 1893800 1896200 5 0 . 1893800 1896200 178,223,138 +chr1 1896200 1904200 4 0 . 1896200 1904200 251,154,153 +chr1 1904200 1905200 3 0 . 1904200 1905200 31,120,180 +chr1 1905200 1908800 4 0 . 1905200 1908800 251,154,153 +chr1 1908800 1909000 3 0 . 1908800 1909000 31,120,180 +chr1 1909000 1909200 4 0 . 1909000 1909200 251,154,153 +chr1 1909200 1914200 5 0 . 1909200 1914200 178,223,138 +chr1 1914200 1917600 4 0 . 1914200 1917600 251,154,153 +chr1 1917600 1918400 3 0 . 1917600 1918400 31,120,180 +chr1 1918400 1919800 4 0 . 1918400 1919800 251,154,153 +chr1 1919800 1920800 3 0 . 1919800 1920800 31,120,180 +chr1 1920800 1922400 4 0 . 1920800 1922400 251,154,153 +chr1 1922400 1926000 5 0 . 1922400 1926000 178,223,138 +chr1 1926000 1926600 3 0 . 1926000 1926600 31,120,180 +chr1 1926600 1929200 5 0 . 1926600 1929200 178,223,138 +chr1 1929200 1934600 4 0 . 1929200 1934600 251,154,153 +chr1 1934600 1935000 2 0 . 1934600 1935000 166,206,227 +chr1 1935000 1935400 1 0 . 1935000 1935400 51,160,44 +chr1 1935400 1935800 2 0 . 1935400 1935800 166,206,227 +chr1 1935800 1936400 4 0 . 1935800 1936400 251,154,153 +chr1 1936400 1936800 3 0 . 1936400 1936800 31,120,180 +chr1 1936800 1940600 5 0 . 1936800 1940600 178,223,138 +chr1 1940600 1950000 4 0 . 1940600 1950000 251,154,153 +chr1 1950000 1950800 2 0 . 1950000 1950800 166,206,227 +chr1 1950800 1951400 1 0 . 1950800 1951400 51,160,44 +chr1 1951400 1951600 2 0 . 1951400 1951600 166,206,227 +chr1 1951600 1955400 4 0 . 1951600 1955400 251,154,153 +chr1 1955400 1961000 5 0 . 1955400 1961000 178,223,138 +chr1 1961000 1963400 4 0 . 1961000 1963400 251,154,153 +chr1 1963400 1965400 3 0 . 1963400 1965400 31,120,180 +chr1 1965400 1968200 5 0 . 1965400 1968200 178,223,138 +chr1 1968200 1971000 4 0 . 1968200 1971000 251,154,153 +chr1 1971000 1973200 5 0 . 1971000 1973200 178,223,138 +chr1 1973200 1975800 4 0 . 1973200 1975800 251,154,153 +chr1 1975800 1976600 2 0 . 1975800 1976600 166,206,227 +chr1 1976600 1976800 3 0 . 1976600 1976800 31,120,180 +chr1 1976800 1977800 4 0 . 1976800 1977800 251,154,153 +chr1 1977800 1978000 3 0 . 1977800 1978000 31,120,180 +chr1 1978000 1978400 2 0 . 1978000 1978400 166,206,227 +chr1 1978400 1980600 3 0 . 1978400 1980600 31,120,180 +chr1 1980600 1981000 2 0 . 1980600 1981000 166,206,227 +chr1 1981000 1983000 1 0 . 1981000 1983000 51,160,44 +chr1 1983000 1983600 2 0 . 1983000 1983600 166,206,227 +chr1 1983600 1984600 3 0 . 1983600 1984600 31,120,180 +chr1 1984600 1987200 4 0 . 1984600 1987200 251,154,153 +chr1 1987200 1991600 5 0 . 1987200 1991600 178,223,138 +chr1 1991600 1993200 4 0 . 1991600 1993200 251,154,153 +chr1 1993200 2003600 5 0 . 1993200 2003600 178,223,138 +chr1 2003600 2007800 3 0 . 2003600 2007800 31,120,180 +chr1 2007800 2012200 5 0 . 2007800 2012200 178,223,138 +chr1 2012200 2019200 4 0 . 2012200 2019200 251,154,153 +chr1 2019200 2020400 3 0 . 2019200 2020400 31,120,180 +chr1 2020400 2020800 4 0 . 2020400 2020800 251,154,153 +chr1 2020800 2021600 5 0 . 2020800 2021600 178,223,138 +chr1 2021600 2022800 4 0 . 2021600 2022800 251,154,153 +chr1 2022800 2024800 3 0 . 2022800 2024800 31,120,180 +chr1 2024800 2026400 4 0 . 2024800 2026400 251,154,153 +chr1 2026400 2027200 3 0 . 2026400 2027200 31,120,180 +chr1 2027200 2034400 5 0 . 2027200 2034400 178,223,138 +chr1 2034400 2035400 4 0 . 2034400 2035400 251,154,153 +chr1 2035400 2036800 3 0 . 2035400 2036800 31,120,180 +chr1 2036800 2038600 5 0 . 2036800 2038600 178,223,138 +chr1 2038600 2039400 4 0 . 2038600 2039400 251,154,153 +chr1 2039400 2040800 3 0 . 2039400 2040800 31,120,180 +chr1 2040800 2043800 4 0 . 2040800 2043800 251,154,153 +chr1 2043800 2045000 5 0 . 2043800 2045000 178,223,138 +chr1 2045000 2045600 4 0 . 2045000 2045600 251,154,153 +chr1 2045600 2047200 3 0 . 2045600 2047200 31,120,180 +chr1 2047200 2048400 2 0 . 2047200 2048400 166,206,227 +chr1 2048400 2048600 3 0 . 2048400 2048600 31,120,180 +chr1 2048600 2049000 4 0 . 2048600 2049000 251,154,153 +chr1 2049000 2049200 3 0 . 2049000 2049200 31,120,180 +chr1 2049200 2056000 5 0 . 2049200 2056000 178,223,138 +chr1 2056000 2058200 3 0 . 2056000 2058200 31,120,180 +chr1 2058200 2061000 4 0 . 2058200 2061000 251,154,153 +chr1 2061000 2062000 5 0 . 2061000 2062000 178,223,138 +chr1 2062000 2064200 3 0 . 2062000 2064200 31,120,180 +chr1 2064200 2065400 2 0 . 2064200 2065400 166,206,227 +chr1 2065400 2067000 3 0 . 2065400 2067000 31,120,180 +chr1 2067000 2067400 4 0 . 2067000 2067400 251,154,153 +chr1 2067400 2069200 5 0 . 2067400 2069200 178,223,138 +chr1 2069200 2070000 4 0 . 2069200 2070000 251,154,153 +chr1 2070000 2071000 5 0 . 2070000 2071000 178,223,138 +chr1 2071000 2071400 4 0 . 2071000 2071400 251,154,153 +chr1 2071400 2080000 5 0 . 2071400 2080000 178,223,138 +chr1 2080000 2080600 4 0 . 2080000 2080600 251,154,153 +chr1 2080600 2090200 5 0 . 2080600 2090200 178,223,138 +chr1 2090200 2096200 4 0 . 2090200 2096200 251,154,153 +chr1 2096200 2097800 3 0 . 2096200 2097800 31,120,180 +chr1 2097800 2098200 4 0 . 2097800 2098200 251,154,153 +chr1 2098200 2098400 3 0 . 2098200 2098400 31,120,180 +chr1 2098400 2099600 4 0 . 2098400 2099600 251,154,153 +chr1 2099600 2100200 5 0 . 2099600 2100200 178,223,138 +chr1 2100200 2101600 4 0 . 2100200 2101600 251,154,153 +chr1 2101600 2103600 5 0 . 2101600 2103600 178,223,138 +chr1 2103600 2105200 4 0 . 2103600 2105200 251,154,153 +chr1 2105200 2106800 3 0 . 2105200 2106800 31,120,180 +chr1 2106800 2108000 4 0 . 2106800 2108000 251,154,153 +chr1 2108000 2110600 5 0 . 2108000 2110600 178,223,138 +chr1 2110600 2112400 4 0 . 2110600 2112400 251,154,153 +chr1 2112400 2119000 5 0 . 2112400 2119000 178,223,138 +chr1 2119000 2120000 3 0 . 2119000 2120000 31,120,180 +chr1 2120000 2120400 4 0 . 2120000 2120400 251,154,153 +chr1 2120400 2120600 3 0 . 2120400 2120600 31,120,180 +chr1 2120600 2121600 2 0 . 2120600 2121600 166,206,227 +chr1 2121600 2124400 3 0 . 2121600 2124400 31,120,180 +chr1 2124400 2125200 2 0 . 2124400 2125200 166,206,227 +chr1 2125200 2126800 1 0 . 2125200 2126800 51,160,44 +chr1 2126800 2127000 2 0 . 2126800 2127000 166,206,227 +chr1 2127000 2127600 3 0 . 2127000 2127600 31,120,180 +chr1 2127600 2128800 4 0 . 2127600 2128800 251,154,153 +chr1 2128800 2130000 5 0 . 2128800 2130000 178,223,138 +chr1 2130000 2130400 3 0 . 2130000 2130400 31,120,180 +chr1 2130400 2130800 2 0 . 2130400 2130800 166,206,227 +chr1 2130800 2131000 1 0 . 2130800 2131000 51,160,44 +chr1 2131000 2131400 2 0 . 2131000 2131400 166,206,227 +chr1 2131400 2133000 4 0 . 2131400 2133000 251,154,153 +chr1 2133000 2134400 5 0 . 2133000 2134400 178,223,138 +chr1 2134400 2135600 3 0 . 2134400 2135600 31,120,180 +chr1 2135600 2136000 2 0 . 2135600 2136000 166,206,227 +chr1 2136000 2137000 1 0 . 2136000 2137000 51,160,44 +chr1 2137000 2137600 2 0 . 2137000 2137600 166,206,227 +chr1 2137600 2139400 3 0 . 2137600 2139400 31,120,180 +chr1 2139400 2140200 4 0 . 2139400 2140200 251,154,153 +chr1 2140200 2142600 3 0 . 2140200 2142600 31,120,180 +chr1 2142600 2143400 5 0 . 2142600 2143400 178,223,138 +chr1 2143400 2144000 2 0 . 2143400 2144000 166,206,227 +chr1 2144000 2144200 1 0 . 2144000 2144200 51,160,44 +chr1 2144200 2144600 2 0 . 2144200 2144600 166,206,227 +chr1 2144600 2145600 3 0 . 2144600 2145600 31,120,180 +chr1 2145600 2148200 4 0 . 2145600 2148200 251,154,153 +chr1 2148200 2149200 5 0 . 2148200 2149200 178,223,138 +chr1 2149200 2150600 4 0 . 2149200 2150600 251,154,153 +chr1 2150600 2151800 5 0 . 2150600 2151800 178,223,138 +chr1 2151800 2152000 4 0 . 2151800 2152000 251,154,153 +chr1 2152000 2152400 3 0 . 2152000 2152400 31,120,180 +chr1 2152400 2153200 4 0 . 2152400 2153200 251,154,153 +chr1 2153200 2154200 5 0 . 2153200 2154200 178,223,138 +chr1 2154200 2154800 3 0 . 2154200 2154800 31,120,180 +chr1 2154800 2157600 4 0 . 2154800 2157600 251,154,153 +chr1 2157600 2157800 3 0 . 2157600 2157800 31,120,180 +chr1 2157800 2158400 2 0 . 2157800 2158400 166,206,227 +chr1 2158400 2159200 1 0 . 2158400 2159200 51,160,44 +chr1 2159200 2160200 5 0 . 2159200 2160200 178,223,138 +chr1 2160200 2162400 1 0 . 2160200 2162400 51,160,44 +chr1 2162400 2163800 2 0 . 2162400 2163800 166,206,227 +chr1 2163800 2167600 3 0 . 2163800 2167600 31,120,180 +chr1 2167600 2168200 4 0 . 2167600 2168200 251,154,153 +chr1 2168200 2172600 3 0 . 2168200 2172600 31,120,180 +chr1 2172600 2173200 4 0 . 2172600 2173200 251,154,153 +chr1 2173200 2175800 3 0 . 2173200 2175800 31,120,180 +chr1 2175800 2177400 4 0 . 2175800 2177400 251,154,153 +chr1 2177400 2179600 3 0 . 2177400 2179600 31,120,180 +chr1 2179600 2180000 2 0 . 2179600 2180000 166,206,227 +chr1 2180000 2184200 3 0 . 2180000 2184200 31,120,180 +chr1 2184200 2184600 4 0 . 2184200 2184600 251,154,153 +chr1 2184600 2184800 5 0 . 2184600 2184800 178,223,138 +chr1 2184800 2185000 4 0 . 2184800 2185000 251,154,153 +chr1 2185000 2186000 5 0 . 2185000 2186000 178,223,138 +chr1 2186000 2186400 4 0 . 2186000 2186400 251,154,153 +chr1 2186400 2186600 3 0 . 2186400 2186600 31,120,180 +chr1 2186600 2187800 4 0 . 2186600 2187800 251,154,153 +chr1 2187800 2191800 3 0 . 2187800 2191800 31,120,180 +chr1 2191800 2197600 5 0 . 2191800 2197600 178,223,138 +chr1 2197600 2198800 3 0 . 2197600 2198800 31,120,180 +chr1 2198800 2200600 4 0 . 2198800 2200600 251,154,153 +chr1 2200600 2212000 3 0 . 2200600 2212000 31,120,180 +chr1 2212000 2214000 5 0 . 2212000 2214000 178,223,138 +chr1 2214000 2216600 3 0 . 2214000 2216600 31,120,180 +chr1 2216600 2219600 4 0 . 2216600 2219600 251,154,153 +chr1 2219600 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2271400 4 0 . 2267200 2271400 251,154,153 +chr1 2271400 2274800 5 0 . 2271400 2274800 178,223,138 +chr1 2274800 2275200 4 0 . 2274800 2275200 251,154,153 +chr1 2275200 2276200 3 0 . 2275200 2276200 31,120,180 +chr1 2276200 2277800 4 0 . 2276200 2277800 251,154,153 +chr1 2277800 2278400 5 0 . 2277800 2278400 178,223,138 +chr1 2278400 2278600 4 0 . 2278400 2278600 251,154,153 +chr1 2278600 2278800 5 0 . 2278600 2278800 178,223,138 +chr1 2278800 2279000 4 0 . 2278800 2279000 251,154,153 +chr1 2279000 2279200 5 0 . 2279000 2279200 178,223,138 +chr1 2279200 2282800 4 0 . 2279200 2282800 251,154,153 +chr1 2282800 2285200 5 0 . 2282800 2285200 178,223,138 +chr1 2285200 2285400 4 0 . 2285200 2285400 251,154,153 +chr1 2285400 2286200 5 0 . 2285400 2286200 178,223,138 +chr1 2286200 2287400 4 0 . 2286200 2287400 251,154,153 +chr1 2287400 2307800 5 0 . 2287400 2307800 178,223,138 +chr1 2307800 2308800 4 0 . 2307800 2308800 251,154,153 +chr1 2308800 2312200 5 0 . 2308800 2312200 178,223,138 +chr1 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166,206,227 +chr1 2542400 2542800 1 0 . 2542400 2542800 51,160,44 +chr1 2542800 2543000 2 0 . 2542800 2543000 166,206,227 +chr1 2543000 2543600 3 0 . 2543000 2543600 31,120,180 +chr1 2543600 2544000 4 0 . 2543600 2544000 251,154,153 +chr1 2544000 2549000 5 0 . 2544000 2549000 178,223,138 +chr1 2549000 2550800 4 0 . 2549000 2550800 251,154,153 +chr1 2550800 2554800 5 0 . 2550800 2554800 178,223,138 +chr1 2554800 2556600 4 0 . 2554800 2556600 251,154,153 +chr1 2556600 2557600 5 0 . 2556600 2557600 178,223,138 +chr1 2557600 2559600 4 0 . 2557600 2559600 251,154,153 +chr1 2559600 2561200 2 0 . 2559600 2561200 166,206,227 +chr1 2561200 2562200 4 0 . 2561200 2562200 251,154,153 +chr1 2562200 2563200 3 0 . 2562200 2563200 31,120,180 +chr1 2563200 2563800 4 0 . 2563200 2563800 251,154,153 +chr1 2563800 2565600 3 0 . 2563800 2565600 31,120,180 +chr1 2565600 2566800 4 0 . 2565600 2566800 251,154,153 +chr1 2566800 2567400 3 0 . 2566800 2567400 31,120,180 +chr1 2567400 2573000 4 0 . 2567400 2573000 251,154,153 +chr1 2573000 2573800 2 0 . 2573000 2573800 166,206,227 +chr1 2573800 2575000 1 0 . 2573800 2575000 51,160,44 +chr1 2575000 2575400 2 0 . 2575000 2575400 166,206,227 +chr1 2575400 2576600 4 0 . 2575400 2576600 251,154,153 +chr1 2576600 2702800 5 0 . 2576600 2702800 178,223,138 +chr1 2702800 2706200 4 0 . 2702800 2706200 251,154,153 +chr1 2706200 2717800 5 0 . 2706200 2717800 178,223,138 +chr1 2717800 2718400 4 0 . 2717800 2718400 251,154,153 +chr1 2718400 2718600 5 0 . 2718400 2718600 178,223,138 +chr1 2718600 2718800 4 0 . 2718600 2718800 251,154,153 +chr1 2718800 2722200 5 0 . 2718800 2722200 178,223,138 +chr1 2722200 2723200 4 0 . 2722200 2723200 251,154,153 +chr1 2723200 2738200 5 0 . 2723200 2738200 178,223,138 +chr1 2738200 2739800 4 0 . 2738200 2739800 251,154,153 +chr1 2739800 2791400 5 0 . 2739800 2791400 178,223,138 +chr1 2791400 2792600 4 0 . 2791400 2792600 251,154,153 +chr1 2792600 2798400 5 0 . 2792600 2798400 178,223,138 +chr1 2798400 2800800 4 0 . 2798400 2800800 251,154,153 +chr1 2800800 2813400 5 0 . 2800800 2813400 178,223,138 +chr1 2813400 2813600 2 0 . 2813400 2813600 166,206,227 +chr1 2813600 2813800 1 0 . 2813600 2813800 51,160,44 +chr1 2813800 2814000 2 0 . 2813800 2814000 166,206,227 +chr1 2814000 2814200 1 0 . 2814000 2814200 51,160,44 +chr1 2814200 2851200 5 0 . 2814200 2851200 178,223,138 +chr1 2851200 2852600 4 0 . 2851200 2852600 251,154,153 +chr1 2852600 2885200 5 0 . 2852600 2885200 178,223,138 +chr1 2885200 2886400 4 0 . 2885200 2886400 251,154,153 +chr1 2886400 2898400 5 0 . 2886400 2898400 178,223,138 +chr1 2898400 2899400 3 0 . 2898400 2899400 31,120,180 +chr1 2899400 2927600 5 0 . 2899400 2927600 178,223,138 +chr1 2927600 2930200 4 0 . 2927600 2930200 251,154,153 +chr1 2930200 2931000 3 0 . 2930200 2931000 31,120,180 +chr1 2931000 2935000 4 0 . 2931000 2935000 251,154,153 +chr1 2935000 2937200 5 0 . 2935000 2937200 178,223,138 +chr1 2937200 2938800 3 0 . 2937200 2938800 31,120,180 +chr1 2938800 2940000 5 0 . 2938800 2940000 178,223,138 +chr1 2940000 2940400 4 0 . 2940000 2940400 251,154,153 +chr1 2940400 2952800 5 0 . 2940400 2952800 178,223,138 +chr1 2952800 2953000 4 0 . 2952800 2953000 251,154,153 +chr1 2953000 2953600 3 0 . 2953000 2953600 31,120,180 +chr1 2953600 2955200 4 0 . 2953600 2955200 251,154,153 +chr1 2955200 2956000 3 0 . 2955200 2956000 31,120,180 +chr1 2956000 2957400 4 0 . 2956000 2957400 251,154,153 +chr1 2957400 2972400 5 0 . 2957400 2972400 178,223,138 +chr1 2972400 2978600 4 0 . 2972400 2978600 251,154,153 +chr1 2978600 2979200 3 0 . 2978600 2979200 31,120,180 +chr1 2979200 2980800 2 0 . 2979200 2980800 166,206,227 +chr1 2980800 2983800 4 0 . 2980800 2983800 251,154,153 +chr1 2983800 2984000 3 0 . 2983800 2984000 31,120,180 +chr1 2984000 2985000 2 0 . 2984000 2985000 166,206,227 +chr1 2985000 2985800 1 0 . 2985000 2985800 51,160,44 +chr1 2985800 2986200 2 0 . 2985800 2986200 166,206,227 +chr1 2986200 2986800 1 0 . 2986200 2986800 51,160,44 +chr1 2986800 2988000 2 0 . 2986800 2988000 166,206,227 +chr1 2988000 2989600 3 0 . 2988000 2989600 31,120,180 +chr1 2989600 2991000 2 0 . 2989600 2991000 166,206,227 +chr1 2991000 2991400 3 0 . 2991000 2991400 31,120,180 +chr1 2991400 2994600 4 0 . 2991400 2994600 251,154,153 +chr1 2994600 2995600 3 0 . 2994600 2995600 31,120,180 +chr1 2995600 3000200 4 0 . 2995600 3000200 251,154,153 +chr1 3000200 3001200 3 0 . 3000200 3001200 31,120,180 +chr1 3001200 3002000 4 0 . 3001200 3002000 251,154,153 +chr1 3002000 3002400 5 0 . 3002000 3002400 178,223,138 +chr1 3002400 3015200 4 0 . 3002400 3015200 251,154,153 +chr1 3015200 3015800 5 0 . 3015200 3015800 178,223,138 +chr1 3015800 3019600 4 0 . 3015800 3019600 251,154,153 +chr1 3019600 3023200 3 0 . 3019600 3023200 31,120,180 +chr1 3023200 3029800 4 0 . 3023200 3029800 251,154,153 +chr1 3029800 3030200 3 0 . 3029800 3030200 31,120,180 +chr1 3030200 3032600 4 0 . 3030200 3032600 251,154,153 +chr1 3032600 3034000 5 0 . 3032600 3034000 178,223,138 +chr1 3034000 3037600 4 0 . 3034000 3037600 251,154,153 +chr1 3037600 3039400 3 0 . 3037600 3039400 31,120,180 +chr1 3039400 3039600 4 0 . 3039400 3039600 251,154,153 +chr1 3039600 3039800 3 0 . 3039600 3039800 31,120,180 +chr1 3039800 3043400 4 0 . 3039800 3043400 251,154,153 +chr1 3043400 3045200 3 0 . 3043400 3045200 31,120,180 +chr1 3045200 3051800 4 0 . 3045200 3051800 251,154,153 +chr1 3051800 3053000 3 0 . 3051800 3053000 31,120,180 +chr1 3053000 3059200 4 0 . 3053000 3059200 251,154,153 +chr1 3059200 3069400 5 0 . 3059200 3069400 178,223,138 +chr1 3069400 3081200 4 0 . 3069400 3081200 251,154,153 +chr1 3081200 3081600 3 0 . 3081200 3081600 31,120,180 +chr1 3081600 3083600 4 0 . 3081600 3083600 251,154,153 +chr1 3083600 3085400 5 0 . 3083600 3085400 178,223,138 +chr1 3085400 3085600 3 0 . 3085400 3085600 31,120,180 +chr1 3085600 3086800 4 0 . 3085600 3086800 251,154,153 +chr1 3086800 3088000 3 0 . 3086800 3088000 31,120,180 +chr1 3088000 3092000 4 0 . 3088000 3092000 251,154,153 +chr1 3092000 3099000 5 0 . 3092000 3099000 178,223,138 +chr1 3099000 3106600 4 0 . 3099000 3106600 251,154,153 +chr1 3106600 3107600 3 0 . 3106600 3107600 31,120,180 +chr1 3107600 3110600 5 0 . 3107600 3110600 178,223,138 +chr1 3110600 3113200 4 0 . 3110600 3113200 251,154,153 +chr1 3113200 3114600 5 0 . 3113200 3114600 178,223,138 +chr1 3114600 3116600 4 0 . 3114600 3116600 251,154,153 +chr1 3116600 3119000 5 0 . 3116600 3119000 178,223,138 +chr1 3119000 3121000 4 0 . 3119000 3121000 251,154,153 +chr1 3121000 3123400 3 0 . 3121000 3123400 31,120,180 +chr1 3123400 3130400 4 0 . 3123400 3130400 251,154,153 +chr1 3130400 3132800 5 0 . 3130400 3132800 178,223,138 +chr1 3132800 3134400 4 0 . 3132800 3134400 251,154,153 +chr1 3134400 3135200 3 0 . 3134400 3135200 31,120,180 +chr1 3135200 3135800 4 0 . 3135200 3135800 251,154,153 +chr1 3135800 3136600 3 0 . 3135800 3136600 31,120,180 +chr1 3136600 3138200 4 0 . 3136600 3138200 251,154,153 +chr1 3138200 3139400 3 0 . 3138200 3139400 31,120,180 +chr1 3139400 3142800 4 0 . 3139400 3142800 251,154,153 +chr1 3142800 3145800 5 0 . 3142800 3145800 178,223,138 +chr1 3145800 3152000 4 0 . 3145800 3152000 251,154,153 +chr1 3152000 3153000 3 0 . 3152000 3153000 31,120,180 +chr1 3153000 3157200 4 0 . 3153000 3157200 251,154,153 +chr1 3157200 3158000 3 0 . 3157200 3158000 31,120,180 +chr1 3158000 3159600 4 0 . 3158000 3159600 251,154,153 +chr1 3159600 3161400 5 0 . 3159600 3161400 178,223,138 +chr1 3161400 3163800 4 0 . 3161400 3163800 251,154,153 +chr1 3163800 3164800 2 0 . 3163800 3164800 166,206,227 +chr1 3164800 3169200 4 0 . 3164800 3169200 251,154,153 +chr1 3169200 3171800 5 0 . 3169200 3171800 178,223,138 +chr1 3171800 3172200 4 0 . 3171800 3172200 251,154,153 +chr1 3172200 3177600 5 0 . 3172200 3177600 178,223,138 +chr1 3177600 3181400 4 0 . 3177600 3181400 251,154,153 +chr1 3181400 3182400 3 0 . 3181400 3182400 31,120,180 +chr1 3182400 3184400 4 0 . 3182400 3184400 251,154,153 +chr1 3184400 3189200 5 0 . 3184400 3189200 178,223,138 +chr1 3189200 3190600 4 0 . 3189200 3190600 251,154,153 +chr1 3190600 3190800 5 0 . 3190600 3190800 178,223,138 +chr1 3190800 3191000 4 0 . 3190800 3191000 251,154,153 +chr1 3191000 3193600 5 0 . 3191000 3193600 178,223,138 +chr1 3193600 3200200 4 0 . 3193600 3200200 251,154,153 +chr1 3200200 3200600 3 0 . 3200200 3200600 31,120,180 +chr1 3200600 3201600 4 0 . 3200600 3201600 251,154,153 +chr1 3201600 3203200 3 0 . 3201600 3203200 31,120,180 +chr1 3203200 3203800 4 0 . 3203200 3203800 251,154,153 +chr1 3203800 3204200 5 0 . 3203800 3204200 178,223,138 +chr1 3204200 3205800 4 0 . 3204200 3205800 251,154,153 +chr1 3205800 3211200 5 0 . 3205800 3211200 178,223,138 +chr1 3211200 3214400 4 0 . 3211200 3214400 251,154,153 +chr1 3214400 3221000 5 0 . 3214400 3221000 178,223,138 +chr1 3221000 3229400 4 0 . 3221000 3229400 251,154,153 +chr1 3229400 3230600 3 0 . 3229400 3230600 31,120,180 +chr1 3230600 3236200 4 0 . 3230600 3236200 251,154,153 +chr1 3236200 3237200 3 0 . 3236200 3237200 31,120,180 +chr1 3237200 3240400 4 0 . 3237200 3240400 251,154,153 +chr1 3240400 3240800 3 0 . 3240400 3240800 31,120,180 +chr1 3240800 3241600 4 0 . 3240800 3241600 251,154,153 +chr1 3241600 3242000 5 0 . 3241600 3242000 178,223,138 +chr1 3242000 3246400 4 0 . 3242000 3246400 251,154,153 +chr1 3246400 3247600 3 0 . 3246400 3247600 31,120,180 +chr1 3247600 3252000 4 0 . 3247600 3252000 251,154,153 +chr1 3252000 3253600 5 0 . 3252000 3253600 178,223,138 +chr1 3253600 3258600 4 0 . 3253600 3258600 251,154,153 +chr1 3258600 3262200 5 0 . 3258600 3262200 178,223,138 +chr1 3262200 3265200 4 0 . 3262200 3265200 251,154,153 +chr1 3265200 3266000 3 0 . 3265200 3266000 31,120,180 +chr1 3266000 3266400 4 0 . 3266000 3266400 251,154,153 +chr1 3266400 3268200 3 0 . 3266400 3268200 31,120,180 +chr1 3268200 3269400 2 0 . 3268200 3269400 166,206,227 +chr1 3269400 3270400 3 0 . 3269400 3270400 31,120,180 +chr1 3270400 3271200 4 0 . 3270400 3271200 251,154,153 +chr1 3271200 3272400 3 0 . 3271200 3272400 31,120,180 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31,120,180 +chr1 3312600 3319200 4 0 . 3312600 3319200 251,154,153 +chr1 3319200 3320000 3 0 . 3319200 3320000 31,120,180 +chr1 3320000 3323600 4 0 . 3320000 3323600 251,154,153 +chr1 3323600 3324400 3 0 . 3323600 3324400 31,120,180 +chr1 3324400 3325000 4 0 . 3324400 3325000 251,154,153 +chr1 3325000 3326400 5 0 . 3325000 3326400 178,223,138 +chr1 3326400 3341200 4 0 . 3326400 3341200 251,154,153 +chr1 3341200 3341400 3 0 . 3341200 3341400 31,120,180 +chr1 3341400 3341600 2 0 . 3341400 3341600 166,206,227 +chr1 3341600 3344600 4 0 . 3341600 3344600 251,154,153 +chr1 3344600 3346800 5 0 . 3344600 3346800 178,223,138 +chr1 3346800 3347400 4 0 . 3346800 3347400 251,154,153 +chr1 3347400 3349200 3 0 . 3347400 3349200 31,120,180 +chr1 3349200 3355800 4 0 . 3349200 3355800 251,154,153 +chr1 3355800 3356200 3 0 . 3355800 3356200 31,120,180 +chr1 3356200 3356400 4 0 . 3356200 3356400 251,154,153 +chr1 3356400 3357000 3 0 . 3356400 3357000 31,120,180 +chr1 3357000 3357200 4 0 . 3357000 3357200 251,154,153 +chr1 3357200 3357400 3 0 . 3357200 3357400 31,120,180 +chr1 3357400 3358800 4 0 . 3357400 3358800 251,154,153 +chr1 3358800 3359400 3 0 . 3358800 3359400 31,120,180 +chr1 3359400 3362800 4 0 . 3359400 3362800 251,154,153 +chr1 3362800 3365200 5 0 . 3362800 3365200 178,223,138 +chr1 3365200 3369400 4 0 . 3365200 3369400 251,154,153 +chr1 3369400 3370400 3 0 . 3369400 3370400 31,120,180 +chr1 3370400 3371200 2 0 . 3370400 3371200 166,206,227 +chr1 3371200 3372200 1 0 . 3371200 3372200 51,160,44 +chr1 3372200 3372400 2 0 . 3372200 3372400 166,206,227 +chr1 3372400 3375200 3 0 . 3372400 3375200 31,120,180 +chr1 3375200 3376600 4 0 . 3375200 3376600 251,154,153 +chr1 3376600 3378000 3 0 . 3376600 3378000 31,120,180 +chr1 3378000 3378800 4 0 . 3378000 3378800 251,154,153 +chr1 3378800 3379600 3 0 . 3378800 3379600 31,120,180 +chr1 3379600 3382400 5 0 . 3379600 3382400 178,223,138 +chr1 3382400 3383000 4 0 . 3382400 3383000 251,154,153 +chr1 3383000 3387000 5 0 . 3383000 3387000 178,223,138 +chr1 3387000 3389400 3 0 . 3387000 3389400 31,120,180 +chr1 3389400 3389800 4 0 . 3389400 3389800 251,154,153 +chr1 3389800 3392800 5 0 . 3389800 3392800 178,223,138 +chr1 3392800 3398600 4 0 . 3392800 3398600 251,154,153 +chr1 3398600 3401000 3 0 . 3398600 3401000 31,120,180 +chr1 3401000 3401800 4 0 . 3401000 3401800 251,154,153 +chr1 3401800 3404800 5 0 . 3401800 3404800 178,223,138 +chr1 3404800 3407800 4 0 . 3404800 3407800 251,154,153 +chr1 3407800 3408000 3 0 . 3407800 3408000 31,120,180 +chr1 3408000 3408400 2 0 . 3408000 3408400 166,206,227 +chr1 3408400 3408800 3 0 . 3408400 3408800 31,120,180 +chr1 3408800 3409600 4 0 . 3408800 3409600 251,154,153 +chr1 3409600 3418000 5 0 . 3409600 3418000 178,223,138 +chr1 3418000 3419800 4 0 . 3418000 3419800 251,154,153 +chr1 3419800 3422600 5 0 . 3419800 3422600 178,223,138 +chr1 3422600 3425400 4 0 . 3422600 3425400 251,154,153 +chr1 3425400 3432200 5 0 . 3425400 3432200 178,223,138 +chr1 3432200 3447000 4 0 . 3432200 3447000 251,154,153 +chr1 3447000 3447400 2 0 . 3447000 3447400 166,206,227 +chr1 3447400 3448000 1 0 . 3447400 3448000 51,160,44 +chr1 3448000 3448400 2 0 . 3448000 3448400 166,206,227 +chr1 3448400 3448800 3 0 . 3448400 3448800 31,120,180 +chr1 3448800 3459400 4 0 . 3448800 3459400 251,154,153 +chr1 3459400 3461000 3 0 . 3459400 3461000 31,120,180 +chr1 3461000 3462000 4 0 . 3461000 3462000 251,154,153 +chr1 3462000 3463000 3 0 . 3462000 3463000 31,120,180 +chr1 3463000 3463800 4 0 . 3463000 3463800 251,154,153 +chr1 3463800 3464800 3 0 . 3463800 3464800 31,120,180 +chr1 3464800 3469000 4 0 . 3464800 3469000 251,154,153 +chr1 3469000 3469600 5 0 . 3469000 3469600 178,223,138 +chr1 3469600 3475800 4 0 . 3469600 3475800 251,154,153 +chr1 3475800 3476400 5 0 . 3475800 3476400 178,223,138 +chr1 3476400 3478200 4 0 . 3476400 3478200 251,154,153 +chr1 3478200 3481200 5 0 . 3478200 3481200 178,223,138 +chr1 3481200 3481800 4 0 . 3481200 3481800 251,154,153 +chr1 3481800 3482600 3 0 . 3481800 3482600 31,120,180 +chr1 3482600 3482800 4 0 . 3482600 3482800 251,154,153 +chr1 3482800 3486400 5 0 . 3482800 3486400 178,223,138 +chr1 3486400 3487000 4 0 . 3486400 3487000 251,154,153 +chr1 3487000 3487400 3 0 . 3487000 3487400 31,120,180 +chr1 3487400 3494000 5 0 . 3487400 3494000 178,223,138 +chr1 3494000 3494800 4 0 . 3494000 3494800 251,154,153 +chr1 3494800 3497800 5 0 . 3494800 3497800 178,223,138 +chr1 3497800 3498800 4 0 . 3497800 3498800 251,154,153 +chr1 3498800 3506000 5 0 . 3498800 3506000 178,223,138 +chr1 3506000 3511200 3 0 . 3506000 3511200 31,120,180 +chr1 3511200 3511400 4 0 . 3511200 3511400 251,154,153 +chr1 3511400 3512800 3 0 . 3511400 3512800 31,120,180 +chr1 3512800 3513800 4 0 . 3512800 3513800 251,154,153 +chr1 3513800 3516400 3 0 . 3513800 3516400 31,120,180 +chr1 3516400 3518800 4 0 . 3516400 3518800 251,154,153 +chr1 3518800 3519600 3 0 . 3518800 3519600 31,120,180 +chr1 3519600 3524800 4 0 . 3519600 3524800 251,154,153 +chr1 3524800 3526800 3 0 . 3524800 3526800 31,120,180 +chr1 3526800 3527200 2 0 . 3526800 3527200 166,206,227 +chr1 3527200 3528200 1 0 . 3527200 3528200 51,160,44 +chr1 3528200 3528800 2 0 . 3528200 3528800 166,206,227 +chr1 3528800 3529000 3 0 . 3528800 3529000 31,120,180 +chr1 3529000 3529600 4 0 . 3529000 3529600 251,154,153 +chr1 3529600 3531600 3 0 . 3529600 3531600 31,120,180 +chr1 3531600 3535000 4 0 . 3531600 3535000 251,154,153 +chr1 3535000 3536000 3 0 . 3535000 3536000 31,120,180 +chr1 3536000 3537200 4 0 . 3536000 3537200 251,154,153 +chr1 3537200 3539200 5 0 . 3537200 3539200 178,223,138 +chr1 3539200 3540200 4 0 . 3539200 3540200 251,154,153 +chr1 3540200 3540600 2 0 . 3540200 3540600 166,206,227 +chr1 3540600 3541800 1 0 . 3540600 3541800 51,160,44 +chr1 3541800 3542000 2 0 . 3541800 3542000 166,206,227 +chr1 3542000 3542800 1 0 . 3542000 3542800 51,160,44 +chr1 3542800 3546200 5 0 . 3542800 3546200 178,223,138 +chr1 3546200 3547600 4 0 . 3546200 3547600 251,154,153 +chr1 3547600 3549600 3 0 . 3547600 3549600 31,120,180 +chr1 3549600 3550000 4 0 . 3549600 3550000 251,154,153 +chr1 3550000 3565200 5 0 . 3550000 3565200 178,223,138 +chr1 3565200 3565800 2 0 . 3565200 3565800 166,206,227 +chr1 3565800 3566800 1 0 . 3565800 3566800 51,160,44 +chr1 3566800 3567400 2 0 . 3566800 3567400 166,206,227 +chr1 3567400 3569600 1 0 . 3567400 3569600 51,160,44 +chr1 3569600 3570200 2 0 . 3569600 3570200 166,206,227 +chr1 3570200 3574200 4 0 . 3570200 3574200 251,154,153 +chr1 3574200 3575200 3 0 . 3574200 3575200 31,120,180 +chr1 3575200 3585400 4 0 . 3575200 3585400 251,154,153 +chr1 3585400 3586000 3 0 . 3585400 3586000 31,120,180 +chr1 3586000 3587800 4 0 . 3586000 3587800 251,154,153 +chr1 3587800 3591200 3 0 . 3587800 3591200 31,120,180 +chr1 3591200 3592800 2 0 . 3591200 3592800 166,206,227 +chr1 3592800 3593600 4 0 . 3592800 3593600 251,154,153 +chr1 3593600 3595800 3 0 . 3593600 3595800 31,120,180 +chr1 3595800 3600200 4 0 . 3595800 3600200 251,154,153 +chr1 3600200 3600600 3 0 . 3600200 3600600 31,120,180 +chr1 3600600 3601000 2 0 . 3600600 3601000 166,206,227 +chr1 3601000 3601600 3 0 . 3601000 3601600 31,120,180 +chr1 3601600 3603600 4 0 . 3601600 3603600 251,154,153 +chr1 3603600 3606800 3 0 . 3603600 3606800 31,120,180 +chr1 3606800 3610400 4 0 . 3606800 3610400 251,154,153 +chr1 3610400 3611400 5 0 . 3610400 3611400 178,223,138 +chr1 3611400 3611800 4 0 . 3611400 3611800 251,154,153 +chr1 3611800 3612400 3 0 . 3611800 3612400 31,120,180 +chr1 3612400 3612800 2 0 . 3612400 3612800 166,206,227 +chr1 3612800 3623200 4 0 . 3612800 3623200 251,154,153 +chr1 3623200 3624000 3 0 . 3623200 3624000 31,120,180 +chr1 3624000 3624600 2 0 . 3624000 3624600 166,206,227 +chr1 3624600 3625400 3 0 . 3624600 3625400 31,120,180 +chr1 3625400 3625800 2 0 . 3625400 3625800 166,206,227 +chr1 3625800 3626600 3 0 . 3625800 3626600 31,120,180 +chr1 3626600 3633600 4 0 . 3626600 3633600 251,154,153 +chr1 3633600 3634600 3 0 . 3633600 3634600 31,120,180 +chr1 3634600 3635200 2 0 . 3634600 3635200 166,206,227 +chr1 3635200 3637600 3 0 . 3635200 3637600 31,120,180 +chr1 3637600 3643800 4 0 . 3637600 3643800 251,154,153 +chr1 3643800 3644000 3 0 . 3643800 3644000 31,120,180 +chr1 3644000 3648400 4 0 . 3644000 3648400 251,154,153 +chr1 3648400 3649200 3 0 . 3648400 3649200 31,120,180 +chr1 3649200 3650000 2 0 . 3649200 3650000 166,206,227 +chr1 3650000 3651600 3 0 . 3650000 3651600 31,120,180 +chr1 3651600 3660400 5 0 . 3651600 3660400 178,223,138 +chr1 3660400 3660800 3 0 . 3660400 3660800 31,120,180 +chr1 3660800 3663000 2 0 . 3660800 3663000 166,206,227 +chr1 3663000 3664200 1 0 . 3663000 3664200 51,160,44 +chr1 3664200 3664400 2 0 . 3664200 3664400 166,206,227 +chr1 3664400 3664600 3 0 . 3664400 3664600 31,120,180 +chr1 3664600 3664800 4 0 . 3664600 3664800 251,154,153 +chr1 3664800 3667600 5 0 . 3664800 3667600 178,223,138 +chr1 3667600 3669200 4 0 . 3667600 3669200 251,154,153 +chr1 3669200 3674800 5 0 . 3669200 3674800 178,223,138 +chr1 3674800 3680800 4 0 . 3674800 3680800 251,154,153 +chr1 3680800 3681200 5 0 . 3680800 3681200 178,223,138 +chr1 3681200 3687200 4 0 . 3681200 3687200 251,154,153 +chr1 3687200 3688200 3 0 . 3687200 3688200 31,120,180 +chr1 3688200 3688600 2 0 . 3688200 3688600 166,206,227 +chr1 3688600 3689600 1 0 . 3688600 3689600 51,160,44 +chr1 3689600 3690400 2 0 . 3689600 3690400 166,206,227 +chr1 3690400 3693400 3 0 . 3690400 3693400 31,120,180 +chr1 3693400 3695800 4 0 . 3693400 3695800 251,154,153 +chr1 3695800 3704400 5 0 . 3695800 3704400 178,223,138 +chr1 3704400 3705200 4 0 . 3704400 3705200 251,154,153 +chr1 3705200 3709400 3 0 . 3705200 3709400 31,120,180 +chr1 3709400 3709800 2 0 . 3709400 3709800 166,206,227 +chr1 3709800 3711000 1 0 . 3709800 3711000 51,160,44 +chr1 3711000 3711800 2 0 . 3711000 3711800 166,206,227 +chr1 3711800 3713600 1 0 . 3711800 3713600 51,160,44 +chr1 3713600 3714400 2 0 . 3713600 3714400 166,206,227 +chr1 3714400 3716200 5 0 . 3714400 3716200 178,223,138 +chr1 3716200 3718000 4 0 . 3716200 3718000 251,154,153 +chr1 3718000 3727400 5 0 . 3718000 3727400 178,223,138 +chr1 3727400 3727600 4 0 . 3727400 3727600 251,154,153 +chr1 3727600 3728200 3 0 . 3727600 3728200 31,120,180 +chr1 3728200 3728400 2 0 . 3728200 3728400 166,206,227 +chr1 3728400 3728800 3 0 . 3728400 3728800 31,120,180 +chr1 3728800 3733800 5 0 . 3728800 3733800 178,223,138 +chr1 3733800 3735200 4 0 . 3733800 3735200 251,154,153 +chr1 3735200 3744400 5 0 . 3735200 3744400 178,223,138 +chr1 3744400 3745000 4 0 . 3744400 3745000 251,154,153 +chr1 3745000 3769400 5 0 . 3745000 3769400 178,223,138 +chr1 3769400 3769600 4 0 . 3769400 3769600 251,154,153 +chr1 3769600 3769800 2 0 . 3769600 3769800 166,206,227 +chr1 3769800 3770000 3 0 . 3769800 3770000 31,120,180 +chr1 3770000 3772200 5 0 . 3770000 3772200 178,223,138 +chr1 3772200 3772800 2 0 . 3772200 3772800 166,206,227 +chr1 3772800 3774600 1 0 . 3772800 3774600 51,160,44 +chr1 3774600 3775200 2 0 . 3774600 3775200 166,206,227 +chr1 3775200 3775800 3 0 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3835400 3836400 251,154,153 +chr1 3836400 3840400 5 0 . 3836400 3840400 178,223,138 +chr1 3840400 3841000 4 0 . 3840400 3841000 251,154,153 +chr1 3841000 3841200 3 0 . 3841000 3841200 31,120,180 +chr1 3841200 3842200 4 0 . 3841200 3842200 251,154,153 +chr1 3842200 3999400 5 0 . 3842200 3999400 178,223,138 +chr1 3999400 4001000 4 0 . 3999400 4001000 251,154,153 +chr1 4001000 4003000 5 0 . 4001000 4003000 178,223,138 +chr1 4003000 4006800 4 0 . 4003000 4006800 251,154,153 +chr1 4006800 4012400 5 0 . 4006800 4012400 178,223,138 +chr1 4012400 4014400 4 0 . 4012400 4014400 251,154,153 +chr1 4014400 4015200 3 0 . 4014400 4015200 31,120,180 +chr1 4015200 4018600 4 0 . 4015200 4018600 251,154,153 +chr1 4018600 4023200 5 0 . 4018600 4023200 178,223,138 +chr1 4023200 4024200 4 0 . 4023200 4024200 251,154,153 +chr1 4024200 4034800 5 0 . 4024200 4034800 178,223,138 +chr1 4034800 4039000 4 0 . 4034800 4039000 251,154,153 +chr1 4039000 4039800 5 0 . 4039000 4039800 178,223,138 +chr1 4039800 4042600 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4081600 4 0 . 4078400 4081600 251,154,153 +chr1 4081600 4082600 5 0 . 4081600 4082600 178,223,138 +chr1 4082600 4083200 4 0 . 4082600 4083200 251,154,153 +chr1 4083200 4085800 5 0 . 4083200 4085800 178,223,138 +chr1 4085800 4087200 4 0 . 4085800 4087200 251,154,153 +chr1 4087200 4088200 3 0 . 4087200 4088200 31,120,180 +chr1 4088200 4089200 4 0 . 4088200 4089200 251,154,153 +chr1 4089200 4092000 5 0 . 4089200 4092000 178,223,138 +chr1 4092000 4093200 4 0 . 4092000 4093200 251,154,153 +chr1 4093200 4094000 3 0 . 4093200 4094000 31,120,180 +chr1 4094000 4094400 2 0 . 4094000 4094400 166,206,227 +chr1 4094400 4094800 3 0 . 4094400 4094800 31,120,180 +chr1 4094800 4095000 4 0 . 4094800 4095000 251,154,153 +chr1 4095000 4104800 5 0 . 4095000 4104800 178,223,138 +chr1 4104800 4106800 4 0 . 4104800 4106800 251,154,153 +chr1 4106800 4107600 3 0 . 4106800 4107600 31,120,180 +chr1 4107600 4111600 4 0 . 4107600 4111600 251,154,153 +chr1 4111600 4113000 5 0 . 4111600 4113000 178,223,138 +chr1 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178,223,138 +chr1 4760200 4761400 3 0 . 4760200 4761400 31,120,180 +chr1 4761400 4763600 4 0 . 4761400 4763600 251,154,153 +chr1 4763600 4764200 3 0 . 4763600 4764200 31,120,180 +chr1 4764200 4764400 4 0 . 4764200 4764400 251,154,153 +chr1 4764400 4765000 5 0 . 4764400 4765000 178,223,138 +chr1 4765000 4765600 4 0 . 4765000 4765600 251,154,153 +chr1 4765600 4765800 3 0 . 4765600 4765800 31,120,180 +chr1 4765800 4768400 4 0 . 4765800 4768400 251,154,153 +chr1 4768400 4771000 3 0 . 4768400 4771000 31,120,180 +chr1 4771000 4771800 2 0 . 4771000 4771800 166,206,227 +chr1 4771800 4774800 4 0 . 4771800 4774800 251,154,153 +chr1 4774800 4775200 3 0 . 4774800 4775200 31,120,180 +chr1 4775200 4775400 4 0 . 4775200 4775400 251,154,153 +chr1 4775400 4779200 5 0 . 4775400 4779200 178,223,138 +chr1 4779200 4781800 4 0 . 4779200 4781800 251,154,153 +chr1 4781800 4784400 5 0 . 4781800 4784400 178,223,138 +chr1 4784400 4784600 4 0 . 4784400 4784600 251,154,153 +chr1 4784600 4785200 3 0 . 4784600 4785200 31,120,180 +chr1 4785200 4786600 4 0 . 4785200 4786600 251,154,153 +chr1 4786600 4787200 3 0 . 4786600 4787200 31,120,180 +chr1 4787200 4790800 4 0 . 4787200 4790800 251,154,153 +chr1 4790800 4791800 5 0 . 4790800 4791800 178,223,138 +chr1 4791800 4795000 4 0 . 4791800 4795000 251,154,153 +chr1 4795000 4795600 3 0 . 4795000 4795600 31,120,180 +chr1 4795600 4798000 5 0 . 4795600 4798000 178,223,138 +chr1 4798000 4805400 4 0 . 4798000 4805400 251,154,153 +chr1 4805400 4806200 3 0 . 4805400 4806200 31,120,180 +chr1 4806200 4810200 4 0 . 4806200 4810200 251,154,153 +chr1 4810200 4811000 5 0 . 4810200 4811000 178,223,138 +chr1 4811000 4811600 4 0 . 4811000 4811600 251,154,153 +chr1 4811600 4812200 3 0 . 4811600 4812200 31,120,180 +chr1 4812200 4812800 4 0 . 4812200 4812800 251,154,153 +chr1 4812800 4814400 5 0 . 4812800 4814400 178,223,138 +chr1 4814400 4815200 3 0 . 4814400 4815200 31,120,180 +chr1 4815200 4816200 2 0 . 4815200 4816200 166,206,227 +chr1 4816200 4817600 3 0 . 4816200 4817600 31,120,180 +chr1 4817600 4819400 4 0 . 4817600 4819400 251,154,153 +chr1 4819400 4822200 5 0 . 4819400 4822200 178,223,138 +chr1 4822200 4823800 4 0 . 4822200 4823800 251,154,153 +chr1 4823800 4828600 5 0 . 4823800 4828600 178,223,138 +chr1 4828600 4835600 4 0 . 4828600 4835600 251,154,153 +chr1 4835600 4836400 3 0 . 4835600 4836400 31,120,180 +chr1 4836400 4840600 4 0 . 4836400 4840600 251,154,153 +chr1 4840600 4841000 5 0 . 4840600 4841000 178,223,138 +chr1 4841000 4847000 4 0 . 4841000 4847000 251,154,153 +chr1 4847000 4848800 5 0 . 4847000 4848800 178,223,138 +chr1 4848800 4850400 4 0 . 4848800 4850400 251,154,153 +chr1 4850400 4854200 5 0 . 4850400 4854200 178,223,138 +chr1 4854200 4855200 4 0 . 4854200 4855200 251,154,153 +chr1 4855200 4880000 5 0 . 4855200 4880000 178,223,138 +chr1 4880000 4881200 4 0 . 4880000 4881200 251,154,153 +chr1 4881200 4885000 5 0 . 4881200 4885000 178,223,138 +chr1 4885000 4885400 3 0 . 4885000 4885400 31,120,180 +chr1 4885400 4889200 4 0 . 4885400 4889200 251,154,153 +chr1 4889200 4890000 5 0 . 4889200 4890000 178,223,138 +chr1 4890000 4891600 4 0 . 4890000 4891600 251,154,153 +chr1 4891600 4896000 5 0 . 4891600 4896000 178,223,138 +chr1 4896000 4898000 4 0 . 4896000 4898000 251,154,153 +chr1 4898000 4906200 5 0 . 4898000 4906200 178,223,138 +chr1 4906200 4908000 4 0 . 4906200 4908000 251,154,153 +chr1 4908000 4908600 3 0 . 4908000 4908600 31,120,180 +chr1 4908600 4910000 4 0 . 4908600 4910000 251,154,153 +chr1 4910000 4929600 5 0 . 4910000 4929600 178,223,138 +chr1 4929600 4934000 4 0 . 4929600 4934000 251,154,153 +chr1 4934000 4940400 5 0 . 4934000 4940400 178,223,138 +chr1 4940400 4941800 3 0 . 4940400 4941800 31,120,180 +chr1 4941800 4954600 5 0 . 4941800 4954600 178,223,138 +chr1 4954600 4955200 4 0 . 4954600 4955200 251,154,153 +chr1 4955200 4956000 3 0 . 4955200 4956000 31,120,180 +chr1 4956000 4956200 4 0 . 4956000 4956200 251,154,153 +chr1 4956200 4956600 5 0 . 4956200 4956600 178,223,138 +chr1 4956600 4958200 4 0 . 4956600 4958200 251,154,153 +chr1 4958200 4973400 5 0 . 4958200 4973400 178,223,138 +chr1 4973400 4974800 4 0 . 4973400 4974800 251,154,153 +chr1 4974800 4987400 5 0 . 4974800 4987400 178,223,138 +chr1 4987400 4991000 4 0 . 4987400 4991000 251,154,153 +chr1 4991000 4993800 3 0 . 4991000 4993800 31,120,180 +chr1 4993800 4995400 5 0 . 4993800 4995400 178,223,138 +chr1 4995400 5000000 4 0 . 4995400 5000000 251,154,153
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/segmentation_1ds.bed Wed Mar 07 16:56:29 2018 -0500 @@ -0,0 +1,273 @@ +chr1 1000000 1001200 4 0 . 1000000 1001200 251,154,153 +chr1 1001200 1001800 5 0 . 1001200 1001800 178,223,138 +chr1 1001800 1003400 4 0 . 1001800 1003400 251,154,153 +chr1 1003400 1003600 3 0 . 1003400 1003600 31,120,180 +chr1 1003600 1004000 2 0 . 1003600 1004000 166,206,227 +chr1 1004000 1005000 1 0 . 1004000 1005000 51,160,44 +chr1 1005000 1005200 2 0 . 1005000 1005200 166,206,227 +chr1 1005200 1005600 3 0 . 1005200 1005600 31,120,180 +chr1 1005600 1010600 4 0 . 1005600 1010600 251,154,153 +chr1 1010600 1014800 5 0 . 1010600 1014800 178,223,138 +chr1 1014800 1016400 2 0 . 1014800 1016400 166,206,227 +chr1 1016400 1016800 3 0 . 1016400 1016800 31,120,180 +chr1 1016800 1017800 4 0 . 1016800 1017800 251,154,153 +chr1 1017800 1026800 5 0 . 1017800 1026800 178,223,138 +chr1 1026800 1028000 4 0 . 1026800 1028000 251,154,153 +chr1 1028000 1047000 5 0 . 1028000 1047000 178,223,138 +chr1 1047000 1047600 4 0 . 1047000 1047600 251,154,153 +chr1 1047600 1047800 3 0 . 1047600 1047800 31,120,180 +chr1 1047800 1048400 4 0 . 1047800 1048400 251,154,153 +chr1 1048400 1048800 5 0 . 1048400 1048800 178,223,138 +chr1 1048800 1049800 4 0 . 1048800 1049800 251,154,153 +chr1 1049800 1050000 3 0 . 1049800 1050000 31,120,180 +chr1 1050000 1050400 2 0 . 1050000 1050400 166,206,227 +chr1 1050400 1052400 1 0 . 1050400 1052400 51,160,44 +chr1 1052400 1052600 5 0 . 1052400 1052600 178,223,138 +chr1 1052600 1057600 4 0 . 1052600 1057600 251,154,153 +chr1 1057600 1058000 3 0 . 1057600 1058000 31,120,180 +chr1 1058000 1061600 4 0 . 1058000 1061600 251,154,153 +chr1 1061600 1064200 5 0 . 1061600 1064200 178,223,138 +chr1 1064200 1064600 4 0 . 1064200 1064600 251,154,153 +chr1 1064600 1066400 5 0 . 1064600 1066400 178,223,138 +chr1 1066400 1067800 4 0 . 1066400 1067800 251,154,153 +chr1 1067800 1068600 3 0 . 1067800 1068600 31,120,180 +chr1 1068600 1070000 4 0 . 1068600 1070000 251,154,153 +chr1 1070000 1070600 5 0 . 1070000 1070600 178,223,138 +chr1 1070600 1071600 4 0 . 1070600 1071600 251,154,153 +chr1 1071600 1072200 3 0 . 1071600 1072200 31,120,180 +chr1 1072200 1073200 2 0 . 1072200 1073200 166,206,227 +chr1 1073200 1073400 3 0 . 1073200 1073400 31,120,180 +chr1 1073400 1074600 4 0 . 1073400 1074600 251,154,153 +chr1 1074600 1076000 5 0 . 1074600 1076000 178,223,138 +chr1 1076000 1076200 4 0 . 1076000 1076200 251,154,153 +chr1 1076200 1076400 3 0 . 1076200 1076400 31,120,180 +chr1 1076400 1077000 4 0 . 1076400 1077000 251,154,153 +chr1 1077000 1077400 3 0 . 1077000 1077400 31,120,180 +chr1 1077400 1081200 4 0 . 1077400 1081200 251,154,153 +chr1 1081200 1082000 5 0 . 1081200 1082000 178,223,138 +chr1 1082000 1082200 4 0 . 1082000 1082200 251,154,153 +chr1 1082200 1083800 5 0 . 1082200 1083800 178,223,138 +chr1 1083800 1084200 4 0 . 1083800 1084200 251,154,153 +chr1 1084200 1085000 5 0 . 1084200 1085000 178,223,138 +chr1 1085000 1086600 4 0 . 1085000 1086600 251,154,153 +chr1 1086600 1090800 5 0 . 1086600 1090800 178,223,138 +chr1 1090800 1092000 4 0 . 1090800 1092000 251,154,153 +chr1 1092000 1092800 3 0 . 1092000 1092800 31,120,180 +chr1 1092800 1093000 2 0 . 1092800 1093000 166,206,227 +chr1 1093000 1093400 1 0 . 1093000 1093400 51,160,44 +chr1 1093400 1093800 2 0 . 1093400 1093800 166,206,227 +chr1 1093800 1094200 3 0 . 1093800 1094200 31,120,180 +chr1 1094200 1095000 4 0 . 1094200 1095000 251,154,153 +chr1 1095000 1096200 5 0 . 1095000 1096200 178,223,138 +chr1 1096200 1096800 4 0 . 1096200 1096800 251,154,153 +chr1 1096800 1098000 3 0 . 1096800 1098000 31,120,180 +chr1 1098000 1098400 2 0 . 1098000 1098400 166,206,227 +chr1 1098400 1101400 3 0 . 1098400 1101400 31,120,180 +chr1 1101400 1103400 4 0 . 1101400 1103400 251,154,153 +chr1 1103400 1103600 5 0 . 1103400 1103600 178,223,138 +chr1 1103600 1104000 4 0 . 1103600 1104000 251,154,153 +chr1 1104000 1104200 5 0 . 1104000 1104200 178,223,138 +chr1 1104200 1105200 4 0 . 1104200 1105200 251,154,153 +chr1 1105200 1106000 3 0 . 1105200 1106000 31,120,180 +chr1 1106000 1108600 4 0 . 1106000 1108600 251,154,153 +chr1 1108600 1109000 3 0 . 1108600 1109000 31,120,180 +chr1 1109000 1109400 2 0 . 1109000 1109400 166,206,227 +chr1 1109400 1110200 3 0 . 1109400 1110200 31,120,180 +chr1 1110200 1111600 4 0 . 1110200 1111600 251,154,153 +chr1 1111600 1112400 3 0 . 1111600 1112400 31,120,180 +chr1 1112400 1113800 4 0 . 1112400 1113800 251,154,153 +chr1 1113800 1114000 5 0 . 1113800 1114000 178,223,138 +chr1 1114000 1119600 4 0 . 1114000 1119600 251,154,153 +chr1 1119600 1133600 5 0 . 1119600 1133600 178,223,138 +chr1 1133600 1136000 4 0 . 1133600 1136000 251,154,153 +chr1 1136000 1136200 3 0 . 1136000 1136200 31,120,180 +chr1 1136200 1136400 2 0 . 1136200 1136400 166,206,227 +chr1 1136400 1136600 1 0 . 1136400 1136600 51,160,44 +chr1 1136600 1137200 2 0 . 1136600 1137200 166,206,227 +chr1 1137200 1138200 5 0 . 1137200 1138200 178,223,138 +chr1 1138200 1141200 4 0 . 1138200 1141200 251,154,153 +chr1 1141200 1142200 2 0 . 1141200 1142200 166,206,227 +chr1 1142200 1142800 3 0 . 1142200 1142800 31,120,180 +chr1 1142800 1145200 4 0 . 1142800 1145200 251,154,153 +chr1 1145200 1149200 5 0 . 1145200 1149200 178,223,138 +chr1 1149200 1150800 4 0 . 1149200 1150800 251,154,153 +chr1 1150800 1153800 5 0 . 1150800 1153800 178,223,138 +chr1 1153800 1154000 4 0 . 1153800 1154000 251,154,153 +chr1 1154000 1165200 5 0 . 1154000 1165200 178,223,138 +chr1 1165200 1165600 4 0 . 1165200 1165600 251,154,153 +chr1 1165600 1166000 5 0 . 1165600 1166000 178,223,138 +chr1 1166000 1166400 2 0 . 1166000 1166400 166,206,227 +chr1 1166400 1167400 1 0 . 1166400 1167400 51,160,44 +chr1 1167400 1167600 2 0 . 1167400 1167600 166,206,227 +chr1 1167600 1168200 3 0 . 1167600 1168200 31,120,180 +chr1 1168200 1168400 2 0 . 1168200 1168400 166,206,227 +chr1 1168400 1169000 3 0 . 1168400 1169000 31,120,180 +chr1 1169000 1169200 2 0 . 1169000 1169200 166,206,227 +chr1 1169200 1169400 3 0 . 1169200 1169400 31,120,180 +chr1 1169400 1177000 4 0 . 1169400 1177000 251,154,153 +chr1 1177000 1179000 5 0 . 1177000 1179000 178,223,138 +chr1 1179000 1181200 4 0 . 1179000 1181200 251,154,153 +chr1 1181200 1181600 3 0 . 1181200 1181600 31,120,180 +chr1 1181600 1182600 2 0 . 1181600 1182600 166,206,227 +chr1 1182600 1183000 3 0 . 1182600 1183000 31,120,180 +chr1 1183000 1183400 4 0 . 1183000 1183400 251,154,153 +chr1 1183400 1186200 5 0 . 1183400 1186200 178,223,138 +chr1 1186200 1186600 4 0 . 1186200 1186600 251,154,153 +chr1 1186600 1190600 5 0 . 1186600 1190600 178,223,138 +chr1 1190600 1192400 4 0 . 1190600 1192400 251,154,153 +chr1 1192400 1194800 3 0 . 1192400 1194800 31,120,180 +chr1 1194800 1196200 4 0 . 1194800 1196200 251,154,153 +chr1 1196200 1200400 5 0 . 1196200 1200400 178,223,138 +chr1 1200400 1201000 4 0 . 1200400 1201000 251,154,153 +chr1 1201000 1206200 5 0 . 1201000 1206200 178,223,138 +chr1 1206200 1206400 2 0 . 1206200 1206400 166,206,227 +chr1 1206400 1206800 3 0 . 1206400 1206800 31,120,180 +chr1 1206800 1207400 4 0 . 1206800 1207400 251,154,153 +chr1 1207400 1208400 2 0 . 1207400 1208400 166,206,227 +chr1 1208400 1209800 1 0 . 1208400 1209800 51,160,44 +chr1 1209800 1210000 2 0 . 1209800 1210000 166,206,227 +chr1 1210000 1210400 3 0 . 1210000 1210400 31,120,180 +chr1 1210400 1211000 4 0 . 1210400 1211000 251,154,153 +chr1 1211000 1214200 5 0 . 1211000 1214200 178,223,138 +chr1 1214200 1214400 4 0 . 1214200 1214400 251,154,153 +chr1 1214400 1216000 5 0 . 1214400 1216000 178,223,138 +chr1 1216000 1217000 4 0 . 1216000 1217000 251,154,153 +chr1 1217000 1219000 5 0 . 1217000 1219000 178,223,138 +chr1 1219000 1223400 4 0 . 1219000 1223400 251,154,153 +chr1 1223400 1225600 5 0 . 1223400 1225600 178,223,138 +chr1 1225600 1227200 4 0 . 1225600 1227200 251,154,153 +chr1 1227200 1228200 3 0 . 1227200 1228200 31,120,180 +chr1 1228200 1228800 4 0 . 1228200 1228800 251,154,153 +chr1 1228800 1229000 3 0 . 1228800 1229000 31,120,180 +chr1 1229000 1229800 2 0 . 1229000 1229800 166,206,227 +chr1 1229800 1230000 3 0 . 1229800 1230000 31,120,180 +chr1 1230000 1230200 4 0 . 1230000 1230200 251,154,153 +chr1 1230200 1233600 5 0 . 1230200 1233600 178,223,138 +chr1 1233600 1236000 4 0 . 1233600 1236000 251,154,153 +chr1 1236000 1236800 5 0 . 1236000 1236800 178,223,138 +chr1 1236800 1239800 4 0 . 1236800 1239800 251,154,153 +chr1 1239800 1241800 3 0 . 1239800 1241800 31,120,180 +chr1 1241800 1242000 2 0 . 1241800 1242000 166,206,227 +chr1 1242000 1242600 3 0 . 1242000 1242600 31,120,180 +chr1 1242600 1244800 1 0 . 1242600 1244800 51,160,44 +chr1 1244800 1245600 2 0 . 1244800 1245600 166,206,227 +chr1 1245600 1246000 4 0 . 1245600 1246000 251,154,153 +chr1 1246000 1250000 5 0 . 1246000 1250000 178,223,138 +chr1 1250000 1250400 4 0 . 1250000 1250400 251,154,153 +chr1 1250400 1251600 3 0 . 1250400 1251600 31,120,180 +chr1 1251600 1251800 4 0 . 1251600 1251800 251,154,153 +chr1 1251800 1253200 5 0 . 1251800 1253200 178,223,138 +chr1 1253200 1255000 4 0 . 1253200 1255000 251,154,153 +chr1 1255000 1256800 5 0 . 1255000 1256800 178,223,138 +chr1 1256800 1258400 4 0 . 1256800 1258400 251,154,153 +chr1 1258400 1258800 3 0 . 1258400 1258800 31,120,180 +chr1 1258800 1259600 2 0 . 1258800 1259600 166,206,227 +chr1 1259600 1260800 1 0 . 1259600 1260800 51,160,44 +chr1 1260800 1261600 2 0 . 1260800 1261600 166,206,227 +chr1 1261600 1264400 5 0 . 1261600 1264400 178,223,138 +chr1 1264400 1267000 4 0 . 1264400 1267000 251,154,153 +chr1 1267000 1272800 5 0 . 1267000 1272800 178,223,138 +chr1 1272800 1274600 4 0 . 1272800 1274600 251,154,153 +chr1 1274600 1276200 5 0 . 1274600 1276200 178,223,138 +chr1 1276200 1276800 4 0 . 1276200 1276800 251,154,153 +chr1 1276800 1280000 5 0 . 1276800 1280000 178,223,138 +chr1 1280000 1282400 4 0 . 1280000 1282400 251,154,153 +chr1 1282400 1283000 3 0 . 1282400 1283000 31,120,180 +chr1 1283000 1283800 2 0 . 1283000 1283800 166,206,227 +chr1 1283800 1284600 1 0 . 1283800 1284600 51,160,44 +chr1 1284600 1285000 2 0 . 1284600 1285000 166,206,227 +chr1 1285000 1285400 1 0 . 1285000 1285400 51,160,44 +chr1 1285400 1286600 5 0 . 1285400 1286600 178,223,138 +chr1 1286600 1287200 2 0 . 1286600 1287200 166,206,227 +chr1 1287200 1288800 3 0 . 1287200 1288800 31,120,180 +chr1 1288800 1291200 2 0 . 1288800 1291200 166,206,227 +chr1 1291200 1292000 3 0 . 1291200 1292000 31,120,180 +chr1 1292000 1293000 4 0 . 1292000 1293000 251,154,153 +chr1 1293000 1295000 3 0 . 1293000 1295000 31,120,180 +chr1 1295000 1296800 4 0 . 1295000 1296800 251,154,153 +chr1 1296800 1297800 3 0 . 1296800 1297800 31,120,180 +chr1 1297800 1298000 4 0 . 1297800 1298000 251,154,153 +chr1 1298000 1299600 5 0 . 1298000 1299600 178,223,138 +chr1 1299600 1300000 4 0 . 1299600 1300000 251,154,153 +chr1 1300000 1306600 5 0 . 1300000 1306600 178,223,138 +chr1 1306600 1307000 4 0 . 1306600 1307000 251,154,153 +chr1 1307000 1307800 3 0 . 1307000 1307800 31,120,180 +chr1 1307800 1308600 4 0 . 1307800 1308600 251,154,153 +chr1 1308600 1308800 2 0 . 1308600 1308800 166,206,227 +chr1 1308800 1309000 3 0 . 1308800 1309000 31,120,180 +chr1 1309000 1309800 2 0 . 1309000 1309800 166,206,227 +chr1 1309800 1311600 1 0 . 1309800 1311600 51,160,44 +chr1 1311600 1312000 2 0 . 1311600 1312000 166,206,227 +chr1 1312000 1332400 5 0 . 1312000 1332400 178,223,138 +chr1 1332400 1332800 4 0 . 1332400 1332800 251,154,153 +chr1 1332800 1333600 2 0 . 1332800 1333600 166,206,227 +chr1 1333600 1335600 1 0 . 1333600 1335600 51,160,44 +chr1 1335600 1336400 2 0 . 1335600 1336400 166,206,227 +chr1 1336400 1338000 3 0 . 1336400 1338000 31,120,180 +chr1 1338000 1338600 4 0 . 1338000 1338600 251,154,153 +chr1 1338600 1340800 5 0 . 1338600 1340800 178,223,138 +chr1 1340800 1341000 4 0 . 1340800 1341000 251,154,153 +chr1 1341000 1341800 2 0 . 1341000 1341800 166,206,227 +chr1 1341800 1343800 1 0 . 1341800 1343800 51,160,44 +chr1 1343800 1344200 2 0 . 1343800 1344200 166,206,227 +chr1 1344200 1344400 3 0 . 1344200 1344400 31,120,180 +chr1 1344400 1345200 2 0 . 1344400 1345200 166,206,227 +chr1 1345200 1346000 5 0 . 1345200 1346000 178,223,138 +chr1 1346000 1346200 2 0 . 1346000 1346200 166,206,227 +chr1 1346200 1347200 3 0 . 1346200 1347200 31,120,180 +chr1 1347200 1347400 4 0 . 1347200 1347400 251,154,153 +chr1 1347400 1351000 5 0 . 1347400 1351000 178,223,138 +chr1 1351000 1351600 4 0 . 1351000 1351600 251,154,153 +chr1 1351600 1354000 5 0 . 1351600 1354000 178,223,138 +chr1 1354000 1354800 4 0 . 1354000 1354800 251,154,153 +chr1 1354800 1355200 3 0 . 1354800 1355200 31,120,180 +chr1 1355200 1355600 2 0 . 1355200 1355600 166,206,227 +chr1 1355600 1358400 3 0 . 1355600 1358400 31,120,180 +chr1 1358400 1360800 4 0 . 1358400 1360800 251,154,153 +chr1 1360800 1362200 3 0 . 1360800 1362200 31,120,180 +chr1 1362200 1363000 2 0 . 1362200 1363000 166,206,227 +chr1 1363000 1363200 1 0 . 1363000 1363200 51,160,44 +chr1 1363200 1363400 2 0 . 1363200 1363400 166,206,227 +chr1 1363400 1364000 4 0 . 1363400 1364000 251,154,153 +chr1 1364000 1365000 5 0 . 1364000 1365000 178,223,138 +chr1 1365000 1365600 4 0 . 1365000 1365600 251,154,153 +chr1 1365600 1369600 3 0 . 1365600 1369600 31,120,180 +chr1 1369600 1369800 2 0 . 1369600 1369800 166,206,227 +chr1 1369800 1370200 3 0 . 1369800 1370200 31,120,180 +chr1 1370200 1371000 2 0 . 1370200 1371000 166,206,227 +chr1 1371000 1371800 1 0 . 1371000 1371800 51,160,44 +chr1 1371800 1372400 2 0 . 1371800 1372400 166,206,227 +chr1 1372400 1372600 3 0 . 1372400 1372600 31,120,180 +chr1 1372600 1374000 4 0 . 1372600 1374000 251,154,153 +chr1 1374000 1374400 5 0 . 1374000 1374400 178,223,138 +chr1 1374400 1374600 4 0 . 1374400 1374600 251,154,153 +chr1 1374600 1375600 5 0 . 1374600 1375600 178,223,138 +chr1 1375600 1376200 4 0 . 1375600 1376200 251,154,153 +chr1 1376200 1376400 3 0 . 1376200 1376400 31,120,180 +chr1 1376400 1377600 4 0 . 1376400 1377600 251,154,153 +chr1 1377600 1405800 5 0 . 1377600 1405800 178,223,138 +chr1 1405800 1406400 2 0 . 1405800 1406400 166,206,227 +chr1 1406400 1407400 1 0 . 1406400 1407400 51,160,44 +chr1 1407400 1407800 5 0 . 1407400 1407800 178,223,138 +chr1 1407800 1408000 2 0 . 1407800 1408000 166,206,227 +chr1 1408000 1408600 1 0 . 1408000 1408600 51,160,44 +chr1 1408600 1440000 5 0 . 1408600 1440000 178,223,138 +chr1 1440000 1440400 4 0 . 1440000 1440400 251,154,153 +chr1 1440400 1446000 5 0 . 1440400 1446000 178,223,138 +chr1 1446000 1446600 2 0 . 1446000 1446600 166,206,227 +chr1 1446600 1447800 1 0 . 1446600 1447800 51,160,44 +chr1 1447800 1448200 5 0 . 1447800 1448200 178,223,138 +chr1 1448200 1448600 2 0 . 1448200 1448600 166,206,227 +chr1 1448600 1471200 5 0 . 1448600 1471200 178,223,138 +chr1 1471200 1474000 4 0 . 1471200 1474000 251,154,153 +chr1 1474000 1474200 3 0 . 1474000 1474200 31,120,180 +chr1 1474200 1474800 2 0 . 1474200 1474800 166,206,227 +chr1 1474800 1476400 1 0 . 1474800 1476400 51,160,44 +chr1 1476400 1476600 2 0 . 1476400 1476600 166,206,227 +chr1 1476600 1476800 3 0 . 1476600 1476800 31,120,180 +chr1 1476800 1477600 4 0 . 1476800 1477600 251,154,153 +chr1 1477600 1486600 5 0 . 1477600 1486600 178,223,138 +chr1 1486600 1488200 4 0 . 1486600 1488200 251,154,153 +chr1 1488200 1496200 5 0 . 1488200 1496200 178,223,138 +chr1 1496200 1497000 4 0 . 1496200 1497000 251,154,153 +chr1 1497000 1500000 5 0 . 1497000 1500000 178,223,138