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comparison test-data/mQC_test_data_mESC/mQC_test_data_mESC.html @ 0:8cd7fafbbdc4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
author rnateam
date Fri, 29 Sep 2017 04:36:16 -0400
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1 <!DOCTYPE html>
2 <html>
3 <head>
4 <title>Mapping QC Report test_data_mESC</title>
5 <meta charset="utf-8"></meta>
6 <meta name="description" content="Overview HTML of all mappingQC results"></meta>
7 <link href="https://fonts.googleapis.com/css?family=Indie+Flower" rel="stylesheet">
8 <style>
9 *{
10 box-sizing: border-box;
11 font-family: 'Helvetica Neue', Helvetica, Arial, sans-serif;
12 }
13
14
15 nav{
16 float:left;
17 padding: 15px;
18 width: 17%;
19 position: fixed;
20 height: 100%;
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24 margin-top: 60px;
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34 padding: 5px;
35 padding-top: 15px;
36
37 }
38
39 nav li{
40 padding: 8px;
41 margin-bottom: 8px;
42 background-color: #33b5e5;
43 color: #ffffff;
44 }
45
46 nav li:hover {
47 background-color: #0099cc;
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49
50 #content{
51 position: absolute;
52 margin-left:19%;
53 height: 76%;
54 }
55
56 #rpf_phase{
57 width:100%;
58 }
59
60 #header{
61 background-color: grey;
62 color: white;
63 position:fixed;
64 height: 2.7cm;
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71 margin-bottom: 10px;
72 overflow: visible;
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75
76 #mappingqc{
77 font-family: 'Indie Flower', cursive;
78 font-size: 44px;
79 padding-left: 10px;
80 position: relative;
81 z-index: 4;
82 }
83 #run_name{
84 padding-left: 43px;
85 position: relative;
86 z-index: 4;
87 }
88
89 #biobix_logo{
90 height:60%;
91 position: absolute;
92 right: 200px;
93 top: 30px;
94 }
95
96 a {
97 color: inherit;
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100
101 .anchor{
102 display: block;
103 height: 14%; /*same height as header*/
104 margin-top: -10px; /*same height as header*/
105 visibility: hidden;
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107
108 #analysis_info_table{
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132 img {
133 max-width: 98%;
134 height: auto;
135 width: auto\9; /* ie8 */
136 }
137
138 #ranked_genes, #cumulative, #genes_density, #annotation_coding, #annotation_noncoding {
139 width: 20cm;
140 }
141
142 #offset_table {
143 float: left;
144 display: block;
145 margin-right: 120px;
146 }
147
148 #plastid_img {
149 float: left;
150 display: block;
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152 }
153
154 #section3 {
155 clear: left;
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157
158
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169 }
170 #footer_content{
171 position: fixed;
172 bottom: -0.3cm;
173 }
174 </style>
175 </head>
176
177 <body>
178 <div id="header">
179 <h1><span id="mappingqc">Mapping QC</span><span id="run_name">test_data_mESC</span></h1>
180 <img src="BIOBIX_logo.png" alt="biobix_logo" id="biobix_logo">
181 </div>
182
183 <nav id="navigator">
184 <ul>
185 <li><a href="#section1">Analysis information</a></li>
186 <li><a href="#section2">Offsets overview</a></li>
187 <li><a href="#section3">Gene distributions</a></li>
188 <li><a href="#section4">Metagenic classification</a></li>
189 <li><a href="#section5">Total phase distribution</a></li>
190 <li><a href="#section6">RPF phase distribution</a></li>
191 <li><a href="#section7">Phase - relative position distribution</a></li>
192 <li><a href="#section8">Triplet identity plots</a></li>
193 </ul>
194 </nav>
195
196 <div id="content">
197 <span class="anchor" id="section1"></span>
198 <h2 id="info">Analysis information</h2>
199 <p>
200 <table id="analysis_info_table">
201 <tr>
202 <th id="table_header">Feature</th>
203 <th id="table_header">Value</th>
204 </tr>
205 <tr>
206 <td>Species</td>
207 <td>mouse</td>
208 </tr>
209
210 <tr>
211 <td>Ensembl version</td>
212 <td>86</td>
213 </tr>
214
215 <tr>
216 <td>Selected offset source</td>
217 <td>standard</td>
218 </tr>
219 <tr>
220 <td>Used only unique alignments</td>
221 <td>Y</td>
222 </tr>
223 <tr>
224 <td>Total mapped genomic sequences</td>
225 <td>10 425</td>
226 </tr>
227
228 </table>
229 </p>
230
231 <span class="anchor" id="section2"></span>
232 <h2 id="plastid">Offsets overview</h2>
233 <p>
234 <table id="offset_table">
235 <tr>
236 <th id="table_header">RPF length</th>
237 <th id="table_header">Offset</th>
238 </tr>
239 <tr>
240 <td>26</td>
241 <td>12</td>
242 </tr>
243 <tr>
244 <td>27</td>
245 <td>12</td>
246 </tr>
247 <tr>
248 <td>28</td>
249 <td>12</td>
250 </tr>
251 <tr>
252 <td>29</td>
253 <td>12</td>
254 </tr>
255 <tr>
256 <td>30</td>
257 <td>12</td>
258 </tr>
259 <tr>
260 <td>31</td>
261 <td>13</td>
262 </tr>
263 <tr>
264 <td>32</td>
265 <td>13</td>
266 </tr>
267 <tr>
268 <td>33</td>
269 <td>13</td>
270 </tr>
271 <tr>
272 <td>34</td>
273 <td>14</td>
274 </tr>
275
276 </table>
277 </p>
278
279
280 <span class="anchor" id="section3"></span>
281 <h2 id="gene_distributions">Gene distributions</h2>
282 <p>
283 <div class="img">
284 <img src="rankedgenes.png" alt="Ranked genes" id="ranked_genes">
285 </div>
286 </p>
287 <p>
288 <div class="img">
289 <img src="cumulative.png" alt="Cumulative genes" id="cumulative">
290 </div>
291 </p>
292 <p>
293 <div class="img">
294 <img src="density.png" alt="Genes density" id="genes_density">
295 </div>
296 </p>
297
298 <span class="anchor" id="section4"></span>
299 <h2 id="metagenic_classification">Metagenic classification</h2>
300 <p>
301 <div class="img">
302 <img src="annotation_coding.png" alt="Metagenic classification coding" id="annotation_coding">
303 </div>
304 </p>
305 <p>
306 <div class="img">
307 <img src="annotation_noncoding.png" alt="Noncoding classification" id="annotation_noncoding">
308 </div>
309 </p>
310
311 <span class="anchor" id="section5"></span>
312 <h2 id="tot_phase">Total phase distribution</h2>
313 <p>
314 <div class="img">
315 <img src="tot_phase.png" alt="total phase plot" id="tot_phase_img">
316 </div>
317 </p>
318
319 <span class="anchor" id="section6"></span>
320 <h2 id="phase_rpf_distr">RPF phase distribution</h2>
321 <p>
322 <div class="img">
323 <img src="rpf_phase.png" alt="rpf phase plot" id="rpf_phase_img">
324 </div>
325 </p>
326
327 <span class="anchor" id="section7"></span>
328 <h2 id="phase_relpos_distr">Phase - relative position distribution</h2>
329 <p>
330 <div class="img">
331 <img src="phase_relpos_distr.png" alt="phase relpos distr" id="phase_relpos_distr_img">
332 </div>
333 </p>
334
335 <span class="anchor" id="section8"></span>
336 <h2 id="triplet_identity">Triplet identity plots</h2>
337 <p>
338 <div class="img">
339 <img src="triplet_id.png" alt="triplet identity plots" id="triplet_id_img">
340 </div>
341 </p>
342 <br><br>
343 </div>
344
345 <div id="footer">
346 <p id="footer_content">Generated with mQC - BioBix lab Ghent (Belgium) - Steven Verbruggen</p>
347 </div>
348
349 </body>
350 </html>