Mercurial > repos > rnateam > mqc
diff test-data/mQC_test_data_mESC/mQC_test_data_mESC.html @ 0:8cd7fafbbdc4 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
| author | rnateam |
|---|---|
| date | Fri, 29 Sep 2017 04:36:16 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mQC_test_data_mESC/mQC_test_data_mESC.html Fri Sep 29 04:36:16 2017 -0400 @@ -0,0 +1,350 @@ +<!DOCTYPE html> +<html> +<head> + <title>Mapping QC Report test_data_mESC</title> + <meta charset="utf-8"></meta> + <meta name="description" content="Overview HTML of all mappingQC results"></meta> + <link href="https://fonts.googleapis.com/css?family=Indie+Flower" rel="stylesheet"> + <style> + *{ + box-sizing: border-box; + font-family: 'Helvetica Neue', Helvetica, Arial, sans-serif; + } + + + nav{ + float:left; + padding: 15px; + width: 17%; + position: fixed; + height: 100%; + overflow: auto; + border-right: ridge; + border-color: lightgrey; + margin-top: 60px; + margin-left: -20px; + padding-left: 20px; + background-color: white; + z-index:1; + } + + nav ul { + list-style-type: none; + margin: 0px; + padding: 5px; + padding-top: 15px; + + } + + nav li{ + padding: 8px; + margin-bottom: 8px; + background-color: #33b5e5; + color: #ffffff; + } + + nav li:hover { + background-color: #0099cc; + } + + #content{ + position: absolute; + margin-left:19%; + height: 76%; + } + + #rpf_phase{ + width:100%; + } + + #header{ + background-color: grey; + color: white; + position:fixed; + height: 2.7cm; + width:110%; + padding: 15px; + padding-top: 10px; + margin-left: -10px; + margin-top: -30px; + margin-right: -10px; + margin-bottom: 10px; + overflow: visible; + z-index: 2; + } + + #mappingqc{ + font-family: 'Indie Flower', cursive; + font-size: 44px; + padding-left: 10px; + position: relative; + z-index: 4; + } + #run_name{ + padding-left: 43px; + position: relative; + z-index: 4; + } + + #biobix_logo{ + height:60%; + position: absolute; + right: 200px; + top: 30px; + } + + a { + color: inherit; + text-decoration: none; + } + + .anchor{ + display: block; + height: 14%; /*same height as header*/ + margin-top: -10px; /*same height as header*/ + visibility: hidden; + } + + #analysis_info_table{ + border-style: none; + border-width: 0px; + } + + th { + border-style: solid; + border-width: 0px; + border-color: white; + border-collapse: collapse; + padding: 5px; + background-color: #33b5e5; + color: #ffffff; + } + + td { + border-style: solid; + border-width: 0px; + border-color: white; + border-collapse: collapse; + background-color: #f2f2f2; + padding: 5px; + } + + img { + max-width: 98%; + height: auto; + width: auto\9; /* ie8 */ + } + + #ranked_genes, #cumulative, #genes_density, #annotation_coding, #annotation_noncoding { + width: 20cm; + } + + #offset_table { + float: left; + display: block; + margin-right: 120px; + } + + #plastid_img { + float: left; + display: block; + max-width: 600px; + } + + #section3 { + clear: left; + } + + + #footer{ + background-color: grey; + color: white; + position: fixed; + bottom: 0cm; + padding-left: 30px; + margin-left: -30px; + height: 0.7cm; + width: 110%; + z-index: 2; + } + #footer_content{ + position: fixed; + bottom: -0.3cm; + } + </style> +</head> + +<body> + <div id="header"> + <h1><span id="mappingqc">Mapping QC</span><span id="run_name">test_data_mESC</span></h1> + <img src="BIOBIX_logo.png" alt="biobix_logo" id="biobix_logo"> + </div> + + <nav id="navigator"> + <ul> + <li><a href="#section1">Analysis information</a></li> + <li><a href="#section2">Offsets overview</a></li> + <li><a href="#section3">Gene distributions</a></li> + <li><a href="#section4">Metagenic classification</a></li> + <li><a href="#section5">Total phase distribution</a></li> + <li><a href="#section6">RPF phase distribution</a></li> + <li><a href="#section7">Phase - relative position distribution</a></li> + <li><a href="#section8">Triplet identity plots</a></li> + </ul> + </nav> + + <div id="content"> + <span class="anchor" id="section1"></span> + <h2 id="info">Analysis information</h2> + <p> + <table id="analysis_info_table"> + <tr> + <th id="table_header">Feature</th> + <th id="table_header">Value</th> + </tr> + <tr> + <td>Species</td> + <td>mouse</td> + </tr> + + <tr> + <td>Ensembl version</td> + <td>86</td> + </tr> + + <tr> + <td>Selected offset source</td> + <td>standard</td> + </tr> + <tr> + <td>Used only unique alignments</td> + <td>Y</td> + </tr> + <tr> + <td>Total mapped genomic sequences</td> + <td>10 425</td> + </tr> + + </table> + </p> + + <span class="anchor" id="section2"></span> + <h2 id="plastid">Offsets overview</h2> + <p> + <table id="offset_table"> + <tr> + <th id="table_header">RPF length</th> + <th id="table_header">Offset</th> + </tr> + <tr> + <td>26</td> + <td>12</td> + </tr> + <tr> + <td>27</td> + <td>12</td> + </tr> + <tr> + <td>28</td> + <td>12</td> + </tr> + <tr> + <td>29</td> + <td>12</td> + </tr> + <tr> + <td>30</td> + <td>12</td> + </tr> + <tr> + <td>31</td> + <td>13</td> + </tr> + <tr> + <td>32</td> + <td>13</td> + </tr> + <tr> + <td>33</td> + <td>13</td> + </tr> + <tr> + <td>34</td> + <td>14</td> + </tr> + + </table> + </p> + + + <span class="anchor" id="section3"></span> + <h2 id="gene_distributions">Gene distributions</h2> + <p> + <div class="img"> + <img src="rankedgenes.png" alt="Ranked genes" id="ranked_genes"> + </div> + </p> + <p> + <div class="img"> + <img src="cumulative.png" alt="Cumulative genes" id="cumulative"> + </div> + </p> + <p> + <div class="img"> + <img src="density.png" alt="Genes density" id="genes_density"> + </div> + </p> + + <span class="anchor" id="section4"></span> + <h2 id="metagenic_classification">Metagenic classification</h2> + <p> + <div class="img"> + <img src="annotation_coding.png" alt="Metagenic classification coding" id="annotation_coding"> + </div> + </p> + <p> + <div class="img"> + <img src="annotation_noncoding.png" alt="Noncoding classification" id="annotation_noncoding"> + </div> + </p> + + <span class="anchor" id="section5"></span> + <h2 id="tot_phase">Total phase distribution</h2> + <p> + <div class="img"> + <img src="tot_phase.png" alt="total phase plot" id="tot_phase_img"> + </div> + </p> + + <span class="anchor" id="section6"></span> + <h2 id="phase_rpf_distr">RPF phase distribution</h2> + <p> + <div class="img"> + <img src="rpf_phase.png" alt="rpf phase plot" id="rpf_phase_img"> + </div> + </p> + + <span class="anchor" id="section7"></span> + <h2 id="phase_relpos_distr">Phase - relative position distribution</h2> + <p> + <div class="img"> + <img src="phase_relpos_distr.png" alt="phase relpos distr" id="phase_relpos_distr_img"> + </div> + </p> + + <span class="anchor" id="section8"></span> + <h2 id="triplet_identity">Triplet identity plots</h2> + <p> + <div class="img"> + <img src="triplet_id.png" alt="triplet identity plots" id="triplet_id_img"> + </div> + </p> + <br><br> + </div> + + <div id="footer"> + <p id="footer_content">Generated with mQC - BioBix lab Ghent (Belgium) - Steven Verbruggen</p> + </div> + +</body> +</html> \ No newline at end of file