Mercurial > repos > rnateam > mqc

annotate test-data/mQC_test_data_mESC/mQC_test_data_mESC.html @ 0:8cd7fafbbdc4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
author rnateam
date Fri, 29 Sep 2017 04:36:16 -0400
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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1 <!DOCTYPE html>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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2 <html>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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3 <head>
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4 <title>Mapping QC Report test_data_mESC</title>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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5 <meta charset="utf-8"></meta>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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6 <meta name="description" content="Overview HTML of all mappingQC results"></meta>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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7 <link href="https://fonts.googleapis.com/css?family=Indie+Flower" rel="stylesheet">
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8 <style>
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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9 *{
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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10 box-sizing: border-box;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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11 font-family: 'Helvetica Neue', Helvetica, Arial, sans-serif;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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12 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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15 nav{
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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16 float:left;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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17 padding: 15px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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18 width: 17%;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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19 position: fixed;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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20 height: 100%;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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21 overflow: auto;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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22 border-right: ridge;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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23 border-color: lightgrey;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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24 margin-top: 60px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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25 margin-left: -20px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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26 padding-left: 20px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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27 background-color: white;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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28 z-index:1;
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29 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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31 nav ul {
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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32 list-style-type: none;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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33 margin: 0px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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34 padding: 5px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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35 padding-top: 15px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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37 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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39 nav li{
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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40 padding: 8px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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41 margin-bottom: 8px;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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42 background-color: #33b5e5;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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43 color: #ffffff;
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44 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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46 nav li:hover {
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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47 background-color: #0099cc;
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48 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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50 #content{
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51 position: absolute;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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52 margin-left:19%;
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53 height: 76%;
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54 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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56 #rpf_phase{
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57 width:100%;
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58 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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60 #header{
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61 background-color: grey;
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62 color: white;
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63 position:fixed;
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64 height: 2.7cm;
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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65 width:110%;
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66 padding: 15px;
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67 padding-top: 10px;
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68 margin-left: -10px;
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69 margin-top: -30px;
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70 margin-right: -10px;
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71 margin-bottom: 10px;
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72 overflow: visible;
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73 z-index: 2;
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74 }
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76 #mappingqc{
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77 font-family: 'Indie Flower', cursive;
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78 font-size: 44px;
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79 padding-left: 10px;
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80 position: relative;
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81 z-index: 4;
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82 }
8cd7fafbbdc4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ commit 27d64fdb96ed232851b1b29cd66250a682df6f18-dirty
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83 #run_name{
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84 padding-left: 43px;
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85 position: relative;
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86 z-index: 4;
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87 }
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88
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89 #biobix_logo{
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90 height:60%;
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91 position: absolute;
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92 right: 200px;
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93 top: 30px;
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94 }
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95
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96 a {
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97 color: inherit;
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98 text-decoration: none;
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99 }
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100
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101 .anchor{
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102 display: block;
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103 height: 14%; /*same height as header*/
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104 margin-top: -10px; /*same height as header*/
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105 visibility: hidden;
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106 }
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107
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108 #analysis_info_table{
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109 border-style: none;
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110 border-width: 0px;
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111 }
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112
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113 th {
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114 border-style: solid;
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115 border-width: 0px;
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116 border-color: white;
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117 border-collapse: collapse;
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118 padding: 5px;
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119 background-color: #33b5e5;
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120 color: #ffffff;
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121 }
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122
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123 td {
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124 border-style: solid;
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125 border-width: 0px;
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126 border-color: white;
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127 border-collapse: collapse;
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128 background-color: #f2f2f2;
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129 padding: 5px;
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130 }
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131
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132 img {
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133 max-width: 98%;
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134 height: auto;
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135 width: auto\9; /* ie8 */
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136 }
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137
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138 #ranked_genes, #cumulative, #genes_density, #annotation_coding, #annotation_noncoding {
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139 width: 20cm;
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140 }
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141
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142 #offset_table {
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143 float: left;
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144 display: block;
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145 margin-right: 120px;
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146 }
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147
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148 #plastid_img {
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149 float: left;
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150 display: block;
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151 max-width: 600px;
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152 }
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153
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154 #section3 {
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155 clear: left;
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156 }
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157
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158
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159 #footer{
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160 background-color: grey;
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161 color: white;
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162 position: fixed;
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163 bottom: 0cm;
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164 padding-left: 30px;
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165 margin-left: -30px;
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166 height: 0.7cm;
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167 width: 110%;
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168 z-index: 2;
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169 }
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170 #footer_content{
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171 position: fixed;
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172 bottom: -0.3cm;
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173 }
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174 </style>
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175 </head>
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176
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177 <body>
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178 <div id="header">
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179 <h1><span id="mappingqc">Mapping QC</span><span id="run_name">test_data_mESC</span></h1>
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180 <img src="BIOBIX_logo.png" alt="biobix_logo" id="biobix_logo">
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181 </div>
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182
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183 <nav id="navigator">
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184 <ul>
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185 <li><a href="#section1">Analysis information</a></li>
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186 <li><a href="#section2">Offsets overview</a></li>
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187 <li><a href="#section3">Gene distributions</a></li>
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188 <li><a href="#section4">Metagenic classification</a></li>
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189 <li><a href="#section5">Total phase distribution</a></li>
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190 <li><a href="#section6">RPF phase distribution</a></li>
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191 <li><a href="#section7">Phase - relative position distribution</a></li>
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192 <li><a href="#section8">Triplet identity plots</a></li>
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193 </ul>
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194 </nav>
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195
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196 <div id="content">
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197 <span class="anchor" id="section1"></span>
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198 <h2 id="info">Analysis information</h2>
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199 <p>
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200 <table id="analysis_info_table">
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201 <tr>
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202 <th id="table_header">Feature</th>
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203 <th id="table_header">Value</th>
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204 </tr>
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205 <tr>
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206 <td>Species</td>
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207 <td>mouse</td>
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208 </tr>
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209
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210 <tr>
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211 <td>Ensembl version</td>
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212 <td>86</td>
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213 </tr>
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214
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215 <tr>
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216 <td>Selected offset source</td>
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217 <td>standard</td>
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218 </tr>
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219 <tr>
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220 <td>Used only unique alignments</td>
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221 <td>Y</td>
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222 </tr>
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223 <tr>
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224 <td>Total mapped genomic sequences</td>
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225 <td>10 425</td>
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226 </tr>
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227
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228 </table>
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229 </p>
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230
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231 <span class="anchor" id="section2"></span>
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232 <h2 id="plastid">Offsets overview</h2>
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233 <p>
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234 <table id="offset_table">
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235 <tr>
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236 <th id="table_header">RPF length</th>
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237 <th id="table_header">Offset</th>
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238 </tr>
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239 <tr>
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240 <td>26</td>
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241 <td>12</td>
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242 </tr>
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243 <tr>
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244 <td>27</td>
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245 <td>12</td>
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246 </tr>
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247 <tr>
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248 <td>28</td>
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249 <td>12</td>
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250 </tr>
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251 <tr>
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252 <td>29</td>
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253 <td>12</td>
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254 </tr>
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255 <tr>
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256 <td>30</td>
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257 <td>12</td>
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258 </tr>
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259 <tr>
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260 <td>31</td>
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261 <td>13</td>
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262 </tr>
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263 <tr>
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264 <td>32</td>
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265 <td>13</td>
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266 </tr>
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267 <tr>
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268 <td>33</td>
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269 <td>13</td>
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270 </tr>
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271 <tr>
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272 <td>34</td>
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273 <td>14</td>
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274 </tr>
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275
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276 </table>
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277 </p>
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278
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279
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280 <span class="anchor" id="section3"></span>
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281 <h2 id="gene_distributions">Gene distributions</h2>
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282 <p>
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283 <div class="img">
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284 <img src="rankedgenes.png" alt="Ranked genes" id="ranked_genes">
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285 </div>
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286 </p>
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287 <p>
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288 <div class="img">
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289 <img src="cumulative.png" alt="Cumulative genes" id="cumulative">
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290 </div>
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291 </p>
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292 <p>
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293 <div class="img">
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294 <img src="density.png" alt="Genes density" id="genes_density">
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295 </div>
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296 </p>
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297
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298 <span class="anchor" id="section4"></span>
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299 <h2 id="metagenic_classification">Metagenic classification</h2>
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300 <p>
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301 <div class="img">
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302 <img src="annotation_coding.png" alt="Metagenic classification coding" id="annotation_coding">
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303 </div>
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304 </p>
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305 <p>
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306 <div class="img">
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307 <img src="annotation_noncoding.png" alt="Noncoding classification" id="annotation_noncoding">
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308 </div>
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309 </p>
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310
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311 <span class="anchor" id="section5"></span>
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312 <h2 id="tot_phase">Total phase distribution</h2>
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313 <p>
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314 <div class="img">
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315 <img src="tot_phase.png" alt="total phase plot" id="tot_phase_img">
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316 </div>
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317 </p>
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318
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319 <span class="anchor" id="section6"></span>
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320 <h2 id="phase_rpf_distr">RPF phase distribution</h2>
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321 <p>
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322 <div class="img">
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323 <img src="rpf_phase.png" alt="rpf phase plot" id="rpf_phase_img">
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324 </div>
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325 </p>
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326
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327 <span class="anchor" id="section7"></span>
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328 <h2 id="phase_relpos_distr">Phase - relative position distribution</h2>
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329 <p>
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330 <div class="img">
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331 <img src="phase_relpos_distr.png" alt="phase relpos distr" id="phase_relpos_distr_img">
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332 </div>
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333 </p>
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334
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335 <span class="anchor" id="section8"></span>
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336 <h2 id="triplet_identity">Triplet identity plots</h2>
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337 <p>
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338 <div class="img">
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339 <img src="triplet_id.png" alt="triplet identity plots" id="triplet_id_img">
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340 </div>
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341 </p>
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342 <br><br>
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343 </div>
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344
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345 <div id="footer">
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346 <p id="footer_content">Generated with mQC - BioBix lab Ghent (Belgium) - Steven Verbruggen</p>
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347 </div>
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348
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349 </body>
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350 </html>