Mercurial > repos > rnateam > rbpbench

comparison test-data/test_custom.seq_motifs.meme @ 0:7dd2835ce566 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
author rnateam
date Sun, 03 Dec 2023 12:51:54 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:7dd2835ce566
1 MEME version 5
2
3 ALPHABET= ACGT
4
5 strands: +
6
7 Background letter frequencies
8 A 0.250000 C 0.250000 G 0.250000 T 0.250000
9
10 MOTIF PUM1_1
11 letter-probability matrix: alength= 4 w= 7 nsites= 20 E= 0
12 0.000000 0.000000 1.000000 0.000000
13 0.000000 0.000000 1.000000 0.000000
14 0.000000 0.000000 1.000000 0.000000
15 0.223900 0.184800 0.212700 0.378600
16 0.000000 0.000000 1.000000 0.000000
17 0.000000 0.000000 0.835718 0.164282
18 0.041300 0.041200 0.876300 0.041200
19
20 MOTIF PUM1_2
21 letter-probability matrix: alength= 4 w= 9 nsites= 20 E= 0
22 0.000000 0.000000 0.000000 1.000000
23 0.000000 0.000000 0.500000 0.500000
24 0.000000 0.000000 0.000000 1.000000
25 1.000000 0.000000 0.000000 0.000000
26 1.000000 0.000000 0.000000 0.000000
27 0.000000 0.000000 0.000000 1.000000
28 0.500000 0.000000 0.500000 0.000000
29 0.000000 0.000000 0.000000 1.000000
30 0.000000 0.000000 0.000000 1.000000
31
32 MOTIF PUM1_3
33 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
34 0.000000 0.000000 0.000000 1.000000
35 0.000000 0.000000 1.000000 0.000000
36 0.000000 0.000000 0.000000 1.000000
37 0.919505 0.080495 0.000000 0.000000
38 0.145800 0.458500 0.168500 0.227200
39 1.000000 0.000000 0.000000 0.000000
40 0.000000 0.000000 0.100031 0.899969
41 0.867950 0.132050 0.000000 0.000000
42
43 MOTIF PUM2_1
44 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
45 0.000000 0.000000 0.000000 1.000000
46 0.000000 0.000000 1.000000 0.000000
47 0.000000 0.000000 0.000000 1.000000
48 1.000000 0.000000 0.000000 0.000000
49 0.397900 0.158200 0.026000 0.417900
50 1.000000 0.000000 0.000000 0.000000
51 0.000000 0.000000 0.000000 1.000000
52 0.843493 0.000000 0.000000 0.156507
53
54 MOTIF PUM2_2
55 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
56 0.000000 0.000000 0.000000 1.000000
57 0.000000 0.000000 1.000000 0.000000
58 0.000000 0.000000 0.000000 1.000000
59 1.000000 0.000000 0.000000 0.000000
60 0.000000 1.000000 0.000000 0.000000
61 1.000000 0.000000 0.000000 0.000000
62 0.000000 0.000000 0.000000 1.000000
63 0.000000 1.000000 0.000000 0.000000
64
65 MOTIF PUM2_3
66 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
67 0.000000 0.000000 0.000000 1.000000
68 0.000000 0.000000 1.000000 0.000000
69 0.000000 0.000000 0.000000 1.000000
70 1.000000 0.000000 0.000000 0.000000
71 1.000000 0.000000 0.000000 0.000000
72 1.000000 0.000000 0.000000 0.000000
73 0.000000 0.000000 0.000000 1.000000
74 1.000000 0.000000 0.000000 0.000000
75
76 MOTIF PUM2_4
77 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
78 0.000000 0.000000 0.000000 1.000000
79 0.000000 0.000000 1.000000 0.000000
80 0.000000 0.000000 0.000000 1.000000
81 1.000000 0.000000 0.000000 0.000000
82 0.000000 0.000000 1.000000 0.000000
83 1.000000 0.000000 0.000000 0.000000
84 0.000000 0.000000 0.000000 1.000000
85 1.000000 0.000000 0.000000 0.000000
86
87 MOTIF PUM2_5
88 letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 0
89 0.253775 0.137486 0.112989 0.495750
90 0.270800 0.141400 0.146600 0.441200
91 0.000000 0.000000 0.000000 1.000000
92 0.072132 0.000000 0.896223 0.031646
93 0.000000 0.000000 0.000000 1.000000
94 0.968974 0.000000 0.031026 0.000000
95 0.232400 0.319800 0.028700 0.419100
96 0.932355 0.000000 0.000000 0.067645
97 0.121986 0.000000 0.173847 0.704167
98 0.517200 0.063500 0.123600 0.295700
99