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view test-data/test_custom.seq_motifs.meme @ 3:6d2c5b92e9e0 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0a5e323ea389a19e7b372a8870e50f59d1d09f64
author rnateam
date Mon, 18 Dec 2023 19:03:27 +0000
parents 7dd2835ce566
children
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MEME version 5

ALPHABET= ACGT

strands: +

Background letter frequencies
A 0.250000 C 0.250000 G 0.250000 T 0.250000

MOTIF PUM1_1 
letter-probability matrix: alength= 4 w= 7 nsites= 20 E= 0
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.223900  0.184800  0.212700  0.378600 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.835718  0.164282 
 0.041300  0.041200  0.876300  0.041200 

MOTIF PUM1_2 
letter-probability matrix: alength= 4 w= 9 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.500000  0.500000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.500000  0.000000  0.500000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 

MOTIF PUM1_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.919505  0.080495  0.000000  0.000000 
 0.145800  0.458500  0.168500  0.227200 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.100031  0.899969 
 0.867950  0.132050  0.000000  0.000000 

MOTIF PUM2_1 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.397900  0.158200  0.026000  0.417900 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.843493  0.000000  0.000000  0.156507 

MOTIF PUM2_2 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 

MOTIF PUM2_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_4 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_5 
letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 0
 0.253775  0.137486  0.112989  0.495750 
 0.270800  0.141400  0.146600  0.441200 
 0.000000  0.000000  0.000000  1.000000 
 0.072132  0.000000  0.896223  0.031646 
 0.000000  0.000000  0.000000  1.000000 
 0.968974  0.000000  0.031026  0.000000 
 0.232400  0.319800  0.028700  0.419100 
 0.932355  0.000000  0.000000  0.067645 
 0.121986  0.000000  0.173847  0.704167 
 0.517200  0.063500  0.123600  0.295700