Mercurial > repos > rnateam > rbpbench
comparison test-data/test_custom.str_motifs.cm @ 0:7dd2835ce566 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
author | rnateam |
---|---|
date | Sun, 03 Dec 2023 12:51:54 +0000 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:7dd2835ce566 |
---|---|
1 INFERNAL1/a [1.1.3 | Nov 2019] | |
2 NAME Histone3 | |
3 ACC RF00032 | |
4 DESC Histone 3' UTR stem-loop | |
5 STATES 142 | |
6 NODES 42 | |
7 CLEN 46 | |
8 W 57 | |
9 ALPH RNA | |
10 RF no | |
11 CONS yes | |
12 MAP yes | |
13 DATE Fri Apr 4 13:03:46 2014 | |
14 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED | |
15 COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM | |
16 PBEGIN 0.05 | |
17 PEND 0.05 | |
18 WBETA 1e-07 | |
19 QDBBETA1 1e-07 | |
20 QDBBETA2 1e-15 | |
21 N2OMEGA 1.52588e-05 | |
22 N3OMEGA 1.52588e-05 | |
23 ELSELF -0.08926734 | |
24 NSEQ 46 | |
25 EFFN 46.000000 | |
26 CKSUM 471917655 | |
27 NULL 0.000 0.000 0.000 0.000 | |
28 GA 25.00 | |
29 TC 25.00 | |
30 NC 24.90 | |
31 EFP7GF -8.9961 0.74543 | |
32 ECMLC 0.73248 -4.63583 3.49505 1600000 463131 0.002591 | |
33 ECMGC 0.50982 -9.05666 1.92502 1600000 108029 0.003703 | |
34 ECMLI 0.86412 -1.32523 4.80439 1600000 239617 0.005008 | |
35 ECMGI 0.55516 -6.80684 2.91667 1600000 88393 0.004525 | |
36 CM | |
37 [ ROOT 0 ] - - - - - - | |
38 S 0 -1 0 1 4 1 1 57 76 -10.705 -10.912 -0.004 -9.326 | |
39 IL 1 1 2 1 4 1 19 64 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 | |
40 IR 2 2 3 2 3 1 19 63 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
41 [ MATL 1 ] 1 - c - - - | |
42 ML 3 2 3 5 3 1 19 57 76 -11.622 -0.002 -10.276 0.274 0.676 -1.683 -0.183 | |
43 D 4 2 3 5 3 0 15 58 76 -6.174 -1.687 -0.566 | |
44 IL 5 5 3 5 3 1 18 62 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
45 [ MATL 2 ] 2 - c - - - | |
46 ML 6 5 3 8 3 1 18 56 75 -11.622 -0.002 -10.276 0.562 0.685 -1.974 -0.595 | |
47 D 7 5 3 8 3 0 15 57 75 -6.174 -1.687 -0.566 | |
48 IL 8 8 3 8 3 1 17 61 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
49 [ MATL 3 ] 3 - A - - - | |
50 ML 9 8 3 11 3 1 17 55 74 -11.622 -0.002 -10.276 1.588 -1.105 -4.684 -1.031 | |
51 D 10 8 3 11 3 0 14 56 74 -6.174 -1.687 -0.566 | |
52 IL 11 11 3 11 3 1 17 60 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
53 [ MATL 4 ] 4 - A - - - | |
54 ML 12 11 3 14 3 1 16 54 73 -11.622 -0.002 -10.276 1.035 -0.025 -1.895 -0.517 | |
55 D 13 11 3 14 3 0 14 55 73 -6.174 -1.687 -0.566 | |
56 IL 14 14 3 14 3 1 16 59 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
57 [ MATL 5 ] 5 - a - - - | |
58 ML 15 14 3 17 3 1 15 53 72 -11.923 -0.687 -1.402 0.970 0.662 -4.530 -1.266 | |
59 D 16 14 3 17 3 0 14 52 71 -5.620 -0.734 -1.403 | |
60 IL 17 17 3 17 3 1 15 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
61 [ MATR 6 ] - 47 - U - - | |
62 MR 18 17 3 20 3 1 14 52 71 -11.239 -0.003 -9.556 -1.280 -3.255 -0.399 1.446 | |
63 D 19 17 3 20 3 0 13 51 70 -11.650 -0.025 -5.880 | |
64 IR 20 20 3 20 3 1 12 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
65 [ MATR 7 ] - 46 - g - - | |
66 MR 21 20 3 23 3 1 14 51 70 -11.923 -0.002 -10.241 0.333 -0.456 0.341 -0.425 | |
67 D 22 20 3 23 3 0 8 50 68 -6.390 -1.568 -0.620 | |
68 IR 23 23 3 23 3 1 12 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
69 [ MATR 8 ] - 45 - U - - | |
70 MR 24 23 3 26 3 1 13 50 69 -11.923 -0.002 -10.241 0.022 -0.397 -2.351 1.021 | |
71 D 25 23 3 26 3 0 7 49 67 -6.390 -1.568 -0.620 | |
72 IR 26 26 3 26 3 1 11 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
73 [ MATR 9 ] - 44 - u - - | |
74 MR 27 26 3 29 3 1 12 49 68 -11.923 -0.002 -10.241 0.188 -0.473 -0.169 0.323 | |
75 D 28 26 3 29 3 0 6 48 66 -6.390 -1.568 -0.620 | |
76 IR 29 29 3 29 3 1 10 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
77 [ MATR 10 ] - 43 - u - - | |
78 MR 30 29 3 32 3 1 11 48 67 -11.923 -0.002 -10.241 0.043 -1.204 0.229 0.448 | |
79 D 31 29 3 32 3 0 5 47 65 -6.390 -1.568 -0.620 | |
80 IR 32 32 3 32 3 1 10 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
81 [ MATR 11 ] - 42 - u - - | |
82 MR 33 32 3 35 3 1 10 47 66 -11.923 -0.037 -5.328 0.283 -0.639 -0.668 0.596 | |
83 D 34 32 3 35 3 0 5 46 64 -6.390 -1.568 -0.620 | |
84 IR 35 35 3 35 3 1 9 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
85 [ MATR 12 ] - 41 - a - - | |
86 MR 36 35 3 38 3 1 9 46 65 -11.888 -0.002 -10.205 0.690 -2.247 0.302 -0.084 | |
87 D 37 35 3 38 3 0 4 45 64 -8.147 -0.315 -2.376 | |
88 IR 38 38 3 38 3 1 7 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
89 [ MATR 13 ] - 40 - a - - | |
90 MR 39 38 3 41 3 1 8 45 64 -11.923 -0.002 -10.241 0.896 -0.277 -0.185 -1.204 | |
91 D 40 38 3 41 3 0 2 44 62 -6.390 -1.568 -0.620 | |
92 IR 41 41 3 41 3 1 6 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
93 [ MATR 14 ] - 39 - A - - | |
94 MR 42 41 3 44 3 1 7 44 63 -11.923 -0.002 -10.241 1.147 -1.015 -0.320 -1.029 | |
95 D 43 41 3 44 3 0 1 43 61 -6.390 -1.568 -0.620 | |
96 IR 44 44 3 44 3 1 5 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
97 [ MATR 15 ] - 38 - a - - | |
98 MR 45 44 3 47 3 1 7 43 62 -11.923 -0.027 -5.794 0.871 -0.426 -0.479 -0.497 | |
99 D 46 44 3 47 3 0 1 42 60 -6.390 -1.568 -0.620 | |
100 IR 47 47 3 47 3 1 5 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
101 [ MATR 16 ] - 37 - a - - | |
102 MR 48 47 3 50 3 1 6 42 61 -11.898 -0.002 -10.216 0.726 -0.863 -0.477 0.109 | |
103 D 49 47 3 50 3 0 0 41 60 -7.823 -0.406 -2.053 | |
104 IR 50 50 3 50 3 1 3 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
105 [ MATR 17 ] - 36 - a - - | |
106 MR 51 50 3 53 3 1 5 41 60 -11.923 -0.002 -10.241 0.725 -1.911 -0.230 0.297 | |
107 D 52 50 3 53 3 0 0 40 58 -6.390 -1.568 -0.620 | |
108 IR 53 53 3 53 3 1 3 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
109 [ MATR 18 ] - 35 - a - - | |
110 MR 54 53 3 56 3 1 4 40 59 -11.923 -0.002 -10.241 0.828 -0.827 -1.719 0.441 | |
111 D 55 53 3 56 3 0 0 39 57 -6.390 -1.568 -0.620 | |
112 IR 56 56 3 56 3 1 2 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
113 [ MATR 19 ] - 34 - c - - | |
114 MR 57 56 3 59 3 1 3 39 58 -11.923 -0.002 -10.241 0.119 0.695 -0.517 -0.745 | |
115 D 58 56 3 59 3 0 0 38 56 -6.390 -1.568 -0.620 | |
116 IR 59 59 3 59 3 1 2 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
117 [ MATR 20 ] - 33 - a - - | |
118 MR 60 59 3 62 3 1 2 38 57 -11.923 -0.002 -10.241 0.569 -0.255 -1.396 0.378 | |
119 D 61 59 3 62 3 0 0 37 55 -6.390 -1.568 -0.620 | |
120 IR 62 62 3 62 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
121 [ MATR 21 ] - 32 - u - - | |
122 MR 63 62 3 65 3 1 1 37 56 -11.923 -0.056 -4.714 0.347 -0.205 -0.853 0.387 | |
123 D 64 62 3 65 3 0 0 36 54 -6.390 -1.568 -0.620 | |
124 IR 65 65 3 65 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
125 [ MATR 22 ] - 31 - u - - | |
126 MR 66 65 3 68 3 1 3 36 55 -11.868 -0.002 -10.186 0.706 -1.486 -1.611 0.752 | |
127 D 67 65 3 68 3 0 0 35 54 -8.618 -0.220 -2.847 | |
128 IR 68 68 3 68 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
129 [ MATR 23 ] - 30 - u - - | |
130 MR 69 68 3 71 3 1 2 35 54 -11.923 -0.002 -10.241 -0.972 -0.369 0.214 0.638 | |
131 D 70 68 3 71 3 0 0 34 52 -6.390 -1.568 -0.620 | |
132 IR 71 71 3 71 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
133 [ MATR 24 ] - 29 - A - - | |
134 MR 72 71 3 74 3 1 1 34 53 -11.923 -0.047 -4.982 1.166 -1.748 -1.275 0.063 | |
135 D 73 71 3 74 3 0 0 33 52 -6.390 -1.568 -0.620 | |
136 IR 74 74 3 74 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
137 [ MATR 25 ] - 28 - c - - | |
138 MR 75 74 3 77 3 1 1 33 52 -11.878 -0.002 -10.195 -0.910 0.584 -0.997 0.554 | |
139 D 76 74 3 77 3 0 0 32 51 -8.406 -0.258 -2.636 | |
140 IR 77 77 3 77 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
141 [ MATR 26 ] - 27 - A - - | |
142 MR 78 77 3 80 3 1 1 32 51 -11.923 -0.071 -4.384 1.458 -1.557 -2.019 -0.586 | |
143 D 79 77 3 80 3 0 0 31 50 -6.390 -1.568 -0.620 | |
144 IR 80 80 3 80 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
145 [ MATR 27 ] - 26 - a - - | |
146 MR 81 80 3 83 3 1 1 31 50 -1.344 -0.725 -10.171 0.698 0.567 -2.058 -0.607 | |
147 D 82 80 3 83 3 0 0 31 49 -0.277 -4.066 -3.118 | |
148 IR 83 83 3 83 3 1 1 31 49 -6.042 -0.027 -8.281 0.000 0.000 0.000 0.000 | |
149 [ MATR 28 ] - 24 - c - - | |
150 MR 84 83 3 86 3 1 1 30 48 -11.923 -0.002 -10.241 0.331 0.903 -2.658 -0.486 | |
151 D 85 83 3 86 3 0 0 29 47 -6.390 -1.568 -0.620 | |
152 IR 86 86 3 86 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
153 [ MATR 29 ] - 23 - C - - | |
154 MR 87 86 3 89 3 1 1 29 47 -11.923 -0.002 -10.241 -2.740 1.578 -5.132 -0.259 | |
155 D 88 86 3 89 3 0 0 28 46 -6.390 -1.568 -0.620 | |
156 IR 89 89 3 89 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 | |
157 [ MATR 30 ] - 22 - A - - | |
158 MR 90 89 3 92 5 1 1 28 46 -10.571 -0.003 -10.387 -10.599 -11.491 1.957 -3.517 -6.202 -6.036 | |
159 D 91 89 3 92 5 0 0 27 45 -5.352 -0.707 -2.978 -4.409 -2.404 | |
160 IR 92 92 3 92 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
161 [ MATP 31 ] 6 21 G C - - | |
162 MP 93 92 3 97 6 2 2 27 45 -11.637 -11.577 -0.004 -10.353 -10.633 -11.028 -9.446 -6.202 -11.294 -3.624 -11.134 -7.406 -5.494 -10.940 -7.562 3.944 -7.769 -1.149 -5.842 -7.856 -7.917 -10.190 | |
163 ML 94 92 3 97 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 | |
164 MR 95 92 3 97 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 | |
165 D 96 92 3 97 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 | |
166 IL 97 97 5 97 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 | |
167 IR 98 98 6 98 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
168 [ MATP 32 ] 7 20 G C - - | |
169 MP 99 98 6 103 6 2 2 25 43 -11.637 -11.577 -0.004 -10.353 -10.633 -11.028 -9.520 -6.204 -11.599 -3.658 -11.128 -7.383 -5.483 -11.144 -7.569 3.980 -7.767 -4.127 -5.848 -7.844 -7.915 -10.583 | |
170 ML 100 98 6 103 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 | |
171 MR 101 98 6 103 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 | |
172 D 102 98 6 103 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 | |
173 IL 103 103 5 103 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 | |
174 IR 104 104 6 104 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
175 [ MATP 33 ] 8 19 C G - - | |
176 MP 105 104 6 109 6 2 2 23 41 -11.637 -11.577 -0.004 -10.353 -10.633 -11.028 -8.195 -8.273 -7.664 0.485 -6.102 -7.918 3.494 -6.975 -7.717 -4.266 -7.912 -6.303 1.648 -8.123 -3.772 -6.505 | |
177 ML 106 104 6 109 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 | |
178 MR 107 104 6 109 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 | |
179 D 108 104 6 109 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 | |
180 IL 109 109 5 109 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 | |
181 IR 110 110 6 110 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
182 [ MATP 34 ] 9 18 U A - - | |
183 MP 111 110 6 115 6 2 2 21 39 -11.637 -11.577 -0.004 -10.353 -10.633 -11.028 -7.836 -7.795 -7.436 -3.794 -5.957 -7.798 2.220 -6.790 -7.445 1.323 -7.710 -5.649 3.103 -7.832 -3.590 -6.217 | |
184 ML 112 110 6 115 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 | |
185 MR 113 110 6 115 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 | |
186 D 114 110 6 115 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 | |
187 IL 115 115 5 115 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 | |
188 IR 116 116 6 116 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
189 [ MATP 35 ] 10 17 C G - - | |
190 MP 117 116 6 121 6 2 2 19 37 -11.637 -11.577 -0.004 -10.353 -10.633 -11.028 -8.021 -8.050 -7.554 -4.088 -6.028 -7.856 3.184 -6.884 -7.587 0.019 -7.815 -5.994 2.506 -7.979 -3.679 -6.365 | |
191 ML 118 116 6 121 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 | |
192 MR 119 116 6 121 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 | |
193 D 120 116 6 121 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 | |
194 IL 121 121 5 121 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 | |
195 IR 122 122 6 122 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 | |
196 [ MATP 36 ] 11 16 U A - - | |
197 MP 123 122 6 127 4 2 2 17 35 -10.705 -10.912 -0.004 -9.326 -8.498 -8.756 -7.833 -4.969 -6.193 -7.989 1.976 -7.104 -7.931 -4.927 -8.060 -7.105 3.379 -8.342 0.623 -6.731 | |
198 ML 124 122 6 127 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 | |
199 MR 125 122 6 127 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 | |
200 D 126 122 6 127 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 | |
201 IL 127 127 5 127 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 | |
202 IR 128 128 6 128 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
203 [ MATL 37 ] 12 - U - - - | |
204 ML 129 128 6 131 3 1 1 14 32 -11.622 -0.002 -10.276 0.104 -1.394 -4.333 1.319 | |
205 D 130 128 6 131 3 0 0 16 34 -6.174 -1.687 -0.566 | |
206 IL 131 131 3 131 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
207 [ MATL 38 ] 13 - U - - - | |
208 ML 132 131 3 134 3 1 1 12 31 -11.622 -0.002 -10.276 -2.505 0.463 -5.033 1.272 | |
209 D 133 131 3 134 3 0 0 15 33 -6.174 -1.687 -0.566 | |
210 IL 134 134 3 134 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
211 [ MATL 39 ] 14 - U - - - | |
212 ML 135 134 3 137 3 1 1 11 29 -11.622 -0.002 -10.276 -7.616 -6.858 -8.607 1.994 | |
213 D 136 134 3 137 3 0 0 13 32 -6.174 -1.687 -0.566 | |
214 IL 137 137 3 137 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 | |
215 [ MATL 40 ] 15 - a - - - | |
216 ML 138 137 3 140 2 1 1 1 1 * 0.000 0.741 0.478 -2.313 -0.445 | |
217 D 139 137 3 140 2 0 0 0 0 * 0.000 | |
218 IL 140 140 3 140 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 | |
219 [ END 41 ] - - - - - - | |
220 E 141 140 3 -1 0 0 0 0 0 | |
221 // | |
222 HMMER3/f [3.3 | Nov 2019] | |
223 NAME Histone3 | |
224 ACC RF00032 | |
225 DESC Histone 3' UTR stem-loop | |
226 LENG 46 | |
227 MAXL 102 | |
228 ALPH RNA | |
229 RF no | |
230 MM no | |
231 CONS yes | |
232 CS yes | |
233 MAP yes | |
234 DATE Fri Apr 4 13:03:46 2014 | |
235 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED | |
236 NSEQ 46 | |
237 EFFN 42.133911 | |
238 CKSUM 471917655 | |
239 STATS LOCAL MSV -8.1088 0.74543 | |
240 STATS LOCAL VITERBI -8.5088 0.74543 | |
241 STATS LOCAL FORWARD -3.2029 0.74543 | |
242 HMM A C G U | |
243 m->m m->i m->d i->m i->i d->m d->d | |
244 COMPO 1.16847 1.39084 1.71368 1.34673 | |
245 1.38629 1.38629 1.38629 1.38629 | |
246 0.00416 6.17794 6.17794 1.46634 0.26236 0.00000 * | |
247 1 1.19718 0.92283 2.53752 1.50734 1 c - - : | |
248 1.38629 1.38629 1.38629 1.38629 | |
249 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
250 2 0.99976 0.91709 2.73454 1.78721 2 c - - : | |
251 1.38629 1.38629 1.38629 1.38629 | |
252 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
253 3 0.28707 2.15200 4.53977 2.09870 3 A - - : | |
254 1.38629 1.38629 1.38629 1.38629 | |
255 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
256 4 0.67303 1.40667 2.67938 1.73570 4 A - - : | |
257 1.38629 1.38629 1.38629 1.38629 | |
258 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
259 5 0.71631 0.93175 4.42267 2.24827 5 a - - : | |
260 1.38629 1.38629 1.38629 1.38629 | |
261 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
262 6 4.96323 6.10024 0.01150 6.11805 6 G - - < | |
263 1.38629 1.38629 1.38629 1.38629 | |
264 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
265 7 4.97477 6.07793 0.01151 6.10217 7 G - - < | |
266 1.38629 1.38629 1.38629 1.38629 | |
267 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
268 8 2.42219 0.35197 5.16373 1.59825 8 C - - < | |
269 1.38629 1.38629 1.38629 1.38629 | |
270 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
271 9 4.96709 1.22589 1.84282 0.61402 9 U - - < | |
272 1.38629 1.38629 1.38629 1.38629 | |
273 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
274 10 5.14332 0.56593 2.72176 1.02007 10 C - - < | |
275 1.38629 1.38629 1.38629 1.38629 | |
276 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
277 11 5.65512 1.39382 5.58556 0.29488 11 U - - < | |
278 1.38629 1.38629 1.38629 1.38629 | |
279 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
280 12 1.31706 2.34288 4.27893 0.47454 12 U - - _ | |
281 1.38629 1.38629 1.38629 1.38629 | |
282 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
283 13 3.10136 1.06700 4.79001 0.50640 13 U - - _ | |
284 1.38629 1.38629 1.38629 1.38629 | |
285 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
286 14 6.52235 6.01860 7.19543 0.00466 14 U - - _ | |
287 1.38629 1.38629 1.38629 1.38629 | |
288 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
289 15 0.87615 1.05939 2.96086 1.68645 15 a - - _ | |
290 1.38629 1.38629 1.38629 1.38629 | |
291 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
292 16 0.43199 5.71946 1.06961 5.43487 16 A - - > | |
293 1.38629 1.38629 1.38629 1.38629 | |
294 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
295 17 1.03329 2.73783 0.55849 4.90865 17 G - - > | |
296 1.38629 1.38629 1.38629 1.38629 | |
297 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
298 18 0.62348 1.85123 1.21052 4.72873 18 A - - > | |
299 1.38629 1.38629 1.38629 1.38629 | |
300 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
301 19 1.62037 5.32794 0.34630 2.40773 19 G - - > | |
302 1.38629 1.38629 1.38629 1.38629 | |
303 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
304 20 6.16935 0.01425 6.02393 4.64210 20 C - - > | |
305 1.38629 1.38629 1.38629 1.38629 | |
306 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
307 21 6.22221 0.03904 6.06094 3.38213 21 C - - > | |
308 1.38629 1.38629 1.38629 1.38629 | |
309 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
310 22 0.03027 3.82336 5.58493 5.47058 22 A - - : | |
311 1.38629 1.38629 1.38629 1.38629 | |
312 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
313 23 3.26053 0.29487 4.86483 1.56402 23 C - - : | |
314 1.38629 1.38629 1.38629 1.38629 | |
315 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
316 24 1.15929 0.76514 3.19669 1.71411 24 c - - : | |
317 1.38629 1.38629 1.38629 1.38629 | |
318 0.47612 0.97621 6.17794 0.01098 4.51736 1.09861 0.40547 | |
319 25 0.90589 0.99871 2.78941 1.79574 26 a - - : | |
320 1.38629 1.38629 1.38629 1.38629 | |
321 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
322 26 0.37936 2.45545 2.76975 1.78857 27 A - - : | |
323 1.38629 1.38629 1.38629 1.38629 | |
324 0.03553 6.17794 3.41622 1.46634 0.26236 1.09861 0.40547 | |
325 27 2.00288 0.98595 2.07379 1.00440 28 c - - : | |
326 1.38629 1.38629 1.38629 1.38629 | |
327 0.00429 6.14670 6.14670 1.46634 0.26236 0.11900 2.18757 | |
328 28 0.58277 2.57844 2.26067 1.34141 29 A - - : | |
329 1.38629 1.38629 1.38629 1.38629 | |
330 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
331 29 2.04103 1.64155 1.24300 0.94698 30 u - - : | |
332 1.38629 1.38629 1.38629 1.38629 | |
333 0.04224 6.17794 3.23682 1.46634 0.26236 1.09861 0.40547 | |
334 30 0.90025 2.40010 2.48509 0.86868 31 u - - : | |
335 1.38629 1.38629 1.38629 1.38629 | |
336 0.00432 6.14002 6.14002 1.46634 0.26236 0.10040 2.34838 | |
337 31 1.14658 1.52988 1.97258 1.11897 32 u - - : | |
338 1.38629 1.38629 1.38629 1.38629 | |
339 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
340 32 0.99477 1.56394 2.34075 1.12508 33 a - - : | |
341 1.38629 1.38629 1.38629 1.38629 | |
342 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
343 33 1.30260 0.91111 1.74486 1.88763 34 c - - : | |
344 1.38629 1.38629 1.38629 1.38629 | |
345 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
346 34 0.81644 1.95418 2.55798 1.08218 35 a - - : | |
347 1.38629 1.38629 1.38629 1.38629 | |
348 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
349 35 0.88707 2.68494 1.54697 1.18084 36 a - - : | |
350 1.38629 1.38629 1.38629 1.38629 | |
351 0.02155 6.17794 3.95035 1.46634 0.26236 1.09861 0.40547 | |
352 36 0.88692 1.97884 1.71659 1.30871 37 a - - : | |
353 1.38629 1.38629 1.38629 1.38629 | |
354 0.00423 6.16062 6.16062 1.46634 0.26236 0.19522 1.72966 | |
355 37 0.78649 1.68131 1.71782 1.72051 38 a - - : | |
356 1.38629 1.38629 1.38629 1.38629 | |
357 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
358 38 0.59588 2.08432 1.60986 2.08251 39 A - - : | |
359 1.38629 1.38629 1.38629 1.38629 | |
360 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
361 39 0.76886 1.58017 1.51684 2.19720 40 a - - : | |
362 1.38629 1.38629 1.38629 1.38629 | |
363 0.02859 6.17794 3.64554 1.46634 0.26236 1.09861 0.40547 | |
364 40 0.91147 2.90974 1.18115 1.44117 41 a - - : | |
365 1.38629 1.38629 1.38629 1.38629 | |
366 0.00426 6.15362 6.15362 1.46634 0.26236 0.14750 1.98676 | |
367 41 1.19023 1.82584 1.84655 0.97555 42 u - - : | |
368 1.38629 1.38629 1.38629 1.38629 | |
369 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
370 42 1.35396 2.21010 1.23260 1.07716 43 u - - : | |
371 1.38629 1.38629 1.38629 1.38629 | |
372 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
373 43 1.25472 1.71330 1.50591 1.16232 44 u - - : | |
374 1.38629 1.38629 1.38629 1.38629 | |
375 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
376 44 1.37043 1.66018 2.98397 0.68259 45 U - - : | |
377 1.38629 1.38629 1.38629 1.38629 | |
378 0.00416 6.17794 6.17794 1.46634 0.26236 1.09861 0.40547 | |
379 45 1.15612 1.70216 1.15511 1.67140 46 g - - : | |
380 1.38629 1.38629 1.38629 1.38629 | |
381 0.47997 6.17794 0.96989 1.46634 0.26236 1.09861 0.40547 | |
382 46 2.25321 3.55314 1.66807 0.38906 47 U - - : | |
383 1.38629 1.38629 1.38629 1.38629 | |
384 0.00335 5.70132 * 1.46634 0.26236 0.00000 * | |
385 // |