Mercurial > repos > rnateam > rbpbench
diff test-data/test_custom.seq_motifs.meme @ 0:7dd2835ce566 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
| author | rnateam |
|---|---|
| date | Sun, 03 Dec 2023 12:51:54 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_custom.seq_motifs.meme Sun Dec 03 12:51:54 2023 +0000 @@ -0,0 +1,99 @@ +MEME version 5 + +ALPHABET= ACGT + +strands: + + +Background letter frequencies +A 0.250000 C 0.250000 G 0.250000 T 0.250000 + +MOTIF PUM1_1 +letter-probability matrix: alength= 4 w= 7 nsites= 20 E= 0 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.223900 0.184800 0.212700 0.378600 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.835718 0.164282 + 0.041300 0.041200 0.876300 0.041200 + +MOTIF PUM1_2 +letter-probability matrix: alength= 4 w= 9 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 0.500000 0.500000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 0.500000 0.000000 0.500000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 0.000000 1.000000 + +MOTIF PUM1_3 +letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 0.919505 0.080495 0.000000 0.000000 + 0.145800 0.458500 0.168500 0.227200 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.100031 0.899969 + 0.867950 0.132050 0.000000 0.000000 + +MOTIF PUM2_1 +letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.397900 0.158200 0.026000 0.417900 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 0.843493 0.000000 0.000000 0.156507 + +MOTIF PUM2_2 +letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 1.000000 0.000000 0.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 1.000000 0.000000 0.000000 + +MOTIF PUM2_3 +letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + 1.000000 0.000000 0.000000 0.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + +MOTIF PUM2_4 +letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0 + 0.000000 0.000000 0.000000 1.000000 + 0.000000 0.000000 1.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 1.000000 0.000000 + 1.000000 0.000000 0.000000 0.000000 + 0.000000 0.000000 0.000000 1.000000 + 1.000000 0.000000 0.000000 0.000000 + +MOTIF PUM2_5 +letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 0 + 0.253775 0.137486 0.112989 0.495750 + 0.270800 0.141400 0.146600 0.441200 + 0.000000 0.000000 0.000000 1.000000 + 0.072132 0.000000 0.896223 0.031646 + 0.000000 0.000000 0.000000 1.000000 + 0.968974 0.000000 0.031026 0.000000 + 0.232400 0.319800 0.028700 0.419100 + 0.932355 0.000000 0.000000 0.067645 + 0.121986 0.000000 0.173847 0.704167 + 0.517200 0.063500 0.123600 0.295700 +